Table 1.
L1 Inversions Analyzed
| Accession # | Subfamily | % Identitya | Target Site Duplication (TSD) | TSD length |
|---|---|---|---|---|
| AC007486 | Ta | 99.3 | aatt/AAAAAATTTTGG/gcgc | 12 |
| AC006131 | Pre-Ta | 99.3 | ggtc/ACAAAAGATACACTCCTTT/tgac | 19 |
| AC002122 | Ta | 99.7 | cttt/AAAATTTTTTAATG/aatc | 14 |
| aL022153 | Pre-Ta | 99.5 | cttt/AAAAAATACCGATTCC/tgag | 16 |
| AC004883 | Ta | 99.9 | attt/GATAATATGTT/gcat | 11 |
| AC004491 | Ta | 99.2 | ctct/AAAGAAGATATAT/acaa | 13 |
| AL031117 | Pre-Ta | 99.5 | cttc/AAAATGTTAAGGGTC/atct | 15 |
| AL0390998 | Ta | 99.0 | atat/AAAAGATCGGTGA/aaaa | 13 |
| Z84814 | Ta | 99.6 | catt/AAAAACAGCTATAGTTT/atca | 17 |
| Z95325 | Ta | 99.5 | tctc/AAAAACAAAACAA/aaca | 13 |
| AC004053 | Ta | 99.3 | gtat/AAGAATGCTTGTGATTTTTG/taca | 20 |
| AL034425 | Pre-Ta | 99.3 | actc/AAAACTTGGCTGTC/gagg | 14 |
| Z70758 | Pre-Ta | 99.1 | actt/AGAAGTCCATGAATCCA/tgct | 17 |
| AC004220 | Ta | 99.4 | agtt/AAGAAGGAGGGGA/gact | 13 |
| AL023284 | Ta | 99.1 | catt/AAAAAGCATATAGTAT/acac | 16 |
| AF)36938 | Pre-Ta | 99.0 | aaag/AAAAAAATGTTTCTAATTC/aaga | 19 |
| U09115 | Ta | 99.4 | agtt/AAATCATCTGCTGCT/gtgg | 15 |
a
Comparison with a consensus of active L1 elements.