Table 2.
Properties of analyzed patient isolates
| isolate | trofile | viral load, copies/ml | #reads | #reads with v3 loop | #variants |
|---|---|---|---|---|---|
| 1 | X4 | 65815 | 885 | 667 | 67 |
| 2 | X4 | 3236 | 4614 | 3205 | 233 |
| 3 | X4 | 28850 | 3875 | 2825 | 210 |
| 4 | X4 | 199005 | 12063 | 10091 | 325 |
| 5 | X4 | 10082 | 12013 | 9608 | 584 |
| 6 | X4 | 9400 | 3094 | 1581 | 147 |
| 7 | X4 | 48354 | 7847 | 4833 | 388 |
| 8 | R5 | 48000 | 10622 | 8621 | 354 |
| 9 | R5 | 9300 | 1601 | 344 | 57 |
| 10 | R5 | 16400 | 6105 | 4905 | 216 |
| 11 | R5 | 11928 | 11142 | 8677 | 301 |
| 12 | R5 | 1270 | 11551 | 8748 | 283 |
| 13 | R5 | 18709 | 12992 | 10555 | 320 |
| 14 | R5 | 31000 | 7740 | 5808 | 441 |
Characteristics of the isolates sequenced with the 454-machine. The number of variants is the number of different amino acid sequences found for the v3 loop.