Table 1-.
Nucleotide homology of the transcript derived fragments (TDFs) with known gene sequences in non-redundant public databases. Shown are BLASTN results along with their respective similarity values.
| AFLP fragment | dbEST_Id | GenBank accession number | Similarity | E-value |
|---|---|---|---|---|
| A117-1 | 700623271 | HO056150 | retrotransposon protein, putative, Ty1-copia subclass | 5e-22 |
| A115-1 | 70062325 | HO056148 | senescence-associated protein | 1.1 |
| A112-1 | 70062323 | HO056146 | Reverse transcriptase (RNA-dependent DNA polymerase) | 9.7e-06 |
| A110-1 | 70062322 | HO056145 | ATTRX H1, ATTRX1 | 0.24 |
| A107-1 | 70062320 | HO056143 | Ribosomal protein S8 (rps8) gene | 3e-54 |
| A104-1 | 70062319 | HO056142 | RF2 protein | 2e-44 |
| A103-2 | 70062318 | HO056141 | GLR2.6(member of Putative ligand-gated ion channel subunit family) | 2.9 |
| A102-3 | 70062317 | HO056140 | zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein | 1e-02 |
| A040 | 70062301 | HO056124 | transposable element gene; CACTA-like transposase family | 0.54 |
| A038-1 | 70062302 | HO056125 | pentatricopeptide (PPR) repeat-containing protein | 26 |
| A037-2 | 70062303 | HO056126 | Putative 22 kDa kafirin cluster; Ty3-Gypsy type | 9e-14 |
| A035-4 | 70062305 | HO056128 | Homeobox protein 25 | 1.7e-09 |
| A034-3 | 70062306 | HO056129 | zinc finger (B-box type) family protein; Identical to the Zinc finger protein CONSTANS-LIKE 13 (COL13) | 6.1 |
| A033-4 | 70062307 | HO056130 | transposable element gene; | 5.5e-13 |
| A116-1 | gypsy-like retrotransposon family | |||
| A109-2 | ||||
| A032-3 | 70062308 | HO056131 | retrotransposon protein | 1e-13 |
| A021-3 | 70062309 | HO056132 | Prunus umbellata NADP-dependent sorbitol 6-phosphate dehydrogenase (s6pdh) gene |
2e-17 |
| A011-4 | 70062311 | HO056134 | serine /threonine kinase-like protein | 1.2e-02 |
| A010-1 | 70062310 | HO056133 | ATAF-like NAC-domain transcription factor | 6.4e-17 |
| A009-1 | 70062312 | HO056135 | putative reverse transcriptase | 7.9e-09 |
| A008-4 | 70062314 | HO056137 | transposable element gene; non-LTR retrotransposon family (LINE) | 2.5 |
| A007-3 | 70062313 | HO056136 | transposable element gene, pseudogene, hypothetical protein | 1.1 |
| A006-4 | 70062315 | HO056138 | photosystem II protein Z [Daucus carota]protein | 4e-16 |
| A001-4 | 70062316 | HO056139 | transposable element gene; copia-like retrotransposon family | 4.2e-09 |