Table 1.
Sixty-four ancestry informative markers with their NCBI reference numbers, chromosomal location, major allele, and allele frequencies in our sample groups
| SNP | Chromosomal location | Major Allele | SAFDS* | SABOR |
|---|---|---|---|---|
| rs4908736 | 1p36.2 | A | 0.616 | 0.593 |
| rs2225251 | 1p34.1 | G | 0.553 | 0.532 |
| rs2479409 | 1p32.3 | G | 0.609 | 0.553 |
| rs725667 | 1p31.3 | G | 0.943 | 0.938 |
| rs963170 | 1p11.2 | A | 0.521 | 0.553 |
| rs2814778 | 1q23.1 | A | 0.962 | 0.954 |
| rs6003 | 1q31.3 | A | 0.933 | 0.916 |
| rs1008984 | 1q32.1 | G | 0.560 | 0.598 |
| rs2065160 | 1q32.1 | G | 0.538 | 0.424 |
| rs1506069 | 1q42.13 | A | 0.714 | 0.736 |
| rs2752 | 1q42.2 | A | 0.615 | 0.567 |
| rs1435090 | 2p16.3 | G | 0.575 | 0.545 |
| rs3287 | 2p16.2 | A | 0.761 | 0.776 |
| rs7595509 | 2p13.3 | G | 0.560 | 0.588 |
| rs6730157 | 2q21.2 | G | 0.809 | 0.782 |
| rs1344870 | 3p24.3 | A | 0.550 | 0.596 |
| rs1465648 | 3p11.2 | G | 0.795 | 0.778 |
| rs2317212 | 3q12.1 | A | 0.544 | 0.437 |
| rs2613964 | 3q13.2 | A | 0.579 | 0.536 |
| rs951784 | 4q28.1 | A | 0.582 | 0.615 |
| rs1112828 | 4q31.1 | C | 0.538 | 0.591 |
| rs2702414 | 4q34.3 | G | 0.598 | 0.697 |
| rs26247 | 5q21.3 | A | 0.537 | 0.566 |
| rs3340 | 5q33.2 | A | 0.543 | 0.562 |
| rs2001144 | 6q21 | A | 0.682 | 0.690 |
| rs1935946 | 6q22.31 | C | 0.664 | 0.514 |
| rs1881826 | 6q24.3 | G | 0.551 | 0.645 |
| rs2396676 | 7q31.1 | G | 0.722 | 0.686 |
| rs2341823 | 7q32.3 | A | 0.724 | 0.741 |
| rs1320892 | 7q35 | A | 0.508 | 0.509 |
| rs285 | 8p21.3 | G | 0.545 | 0.547 |
| rs983271 | 8p12 | A | 0.693 | 1.000 |
| rs1808089 | 8q21.11 | G | 0.700 | 0.640 |
| rs4130405 | 8q22.2 | A | 0.536 | 0.599 |
| rs1928415 | 9p24.3 | G | 0.899 | 0.873 |
| rs2888998 | 9p13.3 | A | 0.609 | 0.655 |
| rs2149589 | 9q21.2 | A | 0.688 | 0.590 |
| rs2695 | 9q21.31 | A | 0.521 | 0.490 |
| rs1980888 | 9q22.1 | G | 0.505 | 0.595 |
| rs1594335 | 10q22.2 | A | 0.722 | 0.747 |
| rs2207782 | 10q23.1 | A | 0.666 | 0.584 |
| rs563654 | 10q24.1 | G | 0.611 | 0.703 |
| rs1891760 | 10q25.3 | A | 0.596 | 0.574 |
| rs1487214 | 11p15.1 | A | 0.863 | 0.885 |
| rs594689 | 11q13.1 | G | 0.704 | failed |
| rs1042602 | 11q14.4 | C | 0.766 | 0.735 |
| rs1800498 | 11q23.2 | G | 0.671 | 0.574 |
| rs1079598 | 11q23.2 | A | 1.000 | 0.953 |
| rs5443 | 12p13.31 | G | 0.618 | 0.629 |
| rs708156 | 12p11.23 | G | 0.541 | failed |
| rs717091 | 13q14.12 | G | 0.711 | 0.746 |
| rs2078588 | 13q21.33 | C | 0.921 | 0.892 |
| rs1800404 | 15q13.1 | A | 0.540 | 0.578 |
| rs2862 | 15q13.3 | A | 0.519 | 0.593 |
| rs724729 | 15q15.1 | G | 0.882 | 0.867 |
| rs4646 | 15q21.2 | C | 0.538 | 0.581 |
| rs292932 | 16q22.2 | A | 0.751 | 0.727 |
| rs2816 | 17p13.1 | G | 0.733 | 0.658 |
| rs1014263 | 17q21.1 | A | 0.550 | 0.676 |
| rs1464612 | 18q12.1 | A | 0.680 | 0.726 |
| rs1369290 | 18q22.2 | C | 0.920 | 0.926 |
| rs1877751 | 20q13.32 | G | 0.615 | 0.589 |
| rs718387 | 21q22.12 | G | 0.815 | 0.815 |
| rs878825 | 22q11.21 | A | 0.526 | 0.600 |
*
Allele frequencies were estimated using SOLAR while accounting for the relationship among pedigree members.