Table 1.

List of endopterygotan taxa analized in present paper

ORD	TAXON	ACN	REF	ORD	TAXON	ACN	REF
COL	Acmaeodera sp.	FJ613420	[16]	DIP	Drosophila simulans	AF200833	[31]
COL	Adelium sp	FJ613422	[16]	DIP	Drosophila yakuba	X03240	[6]
COL	Anoplophora glabripennis	DQ768215	UNP	DIP	Haematobia irritans	DQ029097	[33]
COL	Apatides fortis	FJ613421	[16]	DIP	Lucilia sericata	AJ422212	[34]
COL	Chaetosoma scaritides	EU877951	[17]	DIP	Mayetiola destructor	GQ387648	[35]
COL	Chauliognathus opacus	FJ613418	[16]	DIP	Rhopalomyia pomum	GQ387649	[35]
COL	Chrysochroa fulgidissima	EU826485	[18]	DIP	Simosyrphus grandicornis	DQ866050	[30]
COL	Crioceris duodecimpunctata	AF467886	[19]	DIP	Trichophthalma punctata	DQ866051	[30]
COL	Cyphon sp.	EU877949	[17]	HYM	Abispa ephippium	EU302588	[36]
COL	Hydroscapha granulum	AM493667	UNP	HYM	Apis mellifera ligustica	L06178	[37]
COL	Lucanus mazama	FJ613419	[16]	HYM	Bombus ignitus	DQ870926	[38]
COL	Macrogyrus oblongus	FJ859901	[14]	HYM	Cephus cinctus	FJ478173	[39]
COL	Mordella atrata	FJ859904	[14]	HYM	Diadegma semiclausum	EU871947	[40]
COL	Priasilpha obscura	EU877952	[17]	HYM	Evania appendigaster	FJ593187	[41]
COL	Psacothea hilaris	FJ424074	[20]	HYM	Melipona bicolor	AF466146	[42]
COL	Pyrocoelia rufa	AF452048	[21]	HYM	Orussus occidentalis	FJ478174	[39]
COL	Pyrophorus divergens	EF398270	[22]	HYM	Vanhornia eucnemidarum	DQ302100	[39]
COL	Rhagophthalmus lufengensis	DQ888607	[23]	LEP	Acraea issoria	GQ376195	[43]
COL	Rhagophthalmus ohbai	AB267275	[23]	LEP	Adoxophyes honmai	DQ073916	[44]
COL	Rhopaea magnicornis	FJ859903	[14]	LEP	Antheraea pernyi	AY242996	[45]
COL	Sphaerius sp.	EU877950	[17]	LEP	Antheraea yamamai	EU726630	[46]
COL	Tetraphalerus bruchi	EU877953	[17]	LEP	Artogeia melete	EU597124	[47]
COL	Trachypachus holmbergi	EU877954	[17]	LEP	Bombyx mandarina	AB070263	[48]
COL	Tribolium castaneum	AJ312413	[24]	LEP	Bombyx mori	AF149768	[48]
DIP	Aedes aegypti	EU352212	UNP	LEP	Coreana raphaelis	DQ102703	[49]
DIP	Aedes albopictus	AY072044	UNP	LEP	Diatraea saccharalis	FJ240227	UNP
DIP	Anopheles gambiae	L20934	[9]	LEP	Eriogyna pyretorum	FJ685653	[50]
DIP	Anopheles quadrimaculatus A	L04272	[10]	LEP	Lymantria dispar	FJ617240	UNP
DIP	Bactrocera carambolae	EF014414	UNP	LEP	Manduca sexta	EU286785	[11]
DIP	Bactrocera dorsalis	DQ845759	[25]	LEP	Ochrogaster lunifer	AM946601	[12]
DIP	Bactrocera oleae	AY210702	[26]	LEP	Phthonandria atrilineata	EU569764	[51]
DIP	Bactrocera papayae	DQ917578	UNP	LEP	Saturnia boisduvalii	EF622227	[52]
DIP	Bactrocera philippinensis	DQ995281	UNP	NEU	Ascaloptynx appendiculatus	FJ171324	[13]
DIP	Ceratitis capitata	AJ242872	[27]	NEU	Ditaxis biseriata	FJ859906	[14]
DIP	Chrysomya putoria	AF352790	[28]	NEU	Libelloides macaronius	FR669150	[**]
DIP	Cochliomyia hominivorax	AF260826	[29]	NEU	Myrmelon immaculatus	FJ207458-9	[13]
DIP	Culicoides arakawae	AB361004	UNP	NEU	Polystoechotes punctatus	FJ171325	[13]
DIP	Cydistomyia duplonotata	DQ866052	[30]	MEG	Corydalus cornutus	FJ171323	[13]
DIP	Dermatobia hominis	AY463155	UNP	MEG	Protohermes concolorus	EU526394	[15]
DIP	Drosophila littoralis	FJ447340	UNP	MEG	Sialis hamata	FJ859905	[14]
DIP	Drosophila mauritiana	AF200830	[31]	RPH	Mongoloraphidia harmandi	FJ859902	[14]
DIP	Drosophila melanogaster	U37541	[32]	RPH	Agulla sp.	FJ207460-1	[13]
DIP	Drosophila sechellia	AF200832	[31]	MCP	Neopanorpa pulchra	FJ169955	UNP

ORD, order; N, identification number; ACN, accession number; REF, reference. COL, Coleoptera; DIP, Diptera; HYM, Hymenoptera; LEP, Lepidoptera, NEU, Neuroptera; MEG, Megaloptera; RPH, Raphidioptera; MCP, Mecoptera. UNP, unpublished mtDNA genome; **, present paper. Within each order taxa are listed alphabetically.