Table 4.
Bacterial Taxa with Significant Differences in Relative Abundance between COPD Patient Group 1 (≤6 Intubation Days) and Group 2 (≥16 Intubation Days)
Phylum | Class | Order | Family | S-Fa | Taxon IDb | Representative speciesc | p-value | q-value | Fluorescence difference (Group 1 – Group 2) |
---|---|---|---|---|---|---|---|---|---|
Firmicutes | Symbiobacteria | Symbiobacterales | Unclassified | 1 | 77 | thermal soil clone YNPFFP9 | <0.001 | <0.01 | 1264 |
Proteobacteria | Deltaproteobacteria | Unclassified | Unclassified | 9 | 244 | deep marine sediment clone MB-C2-152 | <0.02 | <0.05 | 1048 |
Chloroflexi | Anaerolineae | Unclassified | Unclassified | 9 | 375 | forest soil clone C043 | <0.02 | <0.05 | 1873 |
Proteobacteria | Deltaproteobacteria | Desulfuromonadales | Geobacteraceae | 1 | 482 | trichloroethene-contaminated site clone FTLM205 proteobacterium | ≤0.01 | <0.05 | 1092 |
OP10 | CH21 cluster | Unclassified | Unclassified | 1 | 514 | sludge clone SBRA136 | <0.01 | <0.05 | 1081 |
Chlorobi | Unclassified | Unclassified | Unclassified | 8 | 636 | benzene-degrading nitrate-reducing consortium clone Cart-N3 bacterium | <0.01 | <0.05 | 1475 |
Unclassified | Unclassified | Unclassified | Unclassified | 160 | 651 | <0.01 | <0.05 | 1750 | |
Chloroflexi | Unclassified | Unclassified | Unclassified | 7 | 757 | DCP-dechlorinating consortium clone SHA-8 | <0.001 | <0.01 | 1619 |
Natronoanaerobium | Unclassified | Unclassified | Unclassified | 1 | 769 | fjord ikaite column clone un-c23 | <0.001 | <0.01 | 1305 |
Firmicutes | Clostridia | Clostridiales | Peptococc/Acidaminococc | 11 | 940 | Veillonella dispar str. DSM 20735 | <0.01 | <0.05 | 1150 |
OP9/JS1 | OP9 | Unclassified | Unclassified | 1 | 969 | DCP-dechlorinating consortium clone SHA-1 | <0.02 | <0.05 | 1190 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 1050 | Bacillus firmus CV93b | ≤0.001 | <0.05 | 1746 |
Actinobacteria | Actinobacteria | Unclassified | Unclassified | 1 | 1898 | termite gut homogenate clone Rs-J10 bacterium | <0.01 | <0.05 | 1906 |
AD3 | Unclassified | Unclassified | Unclassified | 1 | 2338 | uranium mining waste pile soil clone JG30-KF-C12 | <0.001 | <0.01 | 1148 |
Chloroflexi | Dehalococcoidetes | Unclassified | Unclassified | 1 | 2339 | uranium mill tailings soil sample clone Sh765B-TzT-20 bacterium | <0.02 | <0.05 | 1532 |
Chloroflexi | Unclassified | Unclassified | Unclassified | 1 | 2534 | forest soil clone S085 | <0.001 | <0.01 | 1193 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 2668 | termite gut homogenate clone Rs-G40 bacterium | <0.01 | <0.05 | 2395 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 2694 | oral periodontitis clone FX028 | <0.02 | <0.05 | 1338 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 2714 | termite gut homogenate clone Rs-N27 bacterium | <0.01 | <0.05 | 2061 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 2729 | DCP-dechlorinating consortium clone SHA-58 | <0.01 | <0.05 | 1402 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 2797 | Isolation and identification hyper-ammonia producing swine storage pits manure | <0.01 | <0.05 | 1611 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 2805 | oral periodontitis clone FX033 | <0.02 | <0.05 | 1625 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 2834 | Butyrivibrio fibrisolvens str. OB156 | <0.01 | <0.05 | 1005 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 2994 | termite gut clone Rs-L15 | <0.001 | <0.01 | 3929 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 3021 | Clostridium caminithermale str. DVird3 | <0.01 | <0.05 | 1944 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 3038 | swine intestine clone p-1594-c5 | <0.01 | <0.05 | 1363 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 3059 | Butyrivibrio fibrisolvens str. NCDO 2249 | <0.01 | <0.05 | 1069 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 3060 | termite gut homogenate clone Rs-B14 bacterium | <0.001 | <0.01 | 3703 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 3076 | Clostridium nexile | <0.001 | <0.01 | 1395 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 3077 | Clostridium glycolicum str. DSM 1288 | <0.01 | <0.05 | 1953 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 3171 | Lachnospira pectinoschiza | <0.01 | <0.05 | 1398 |
Firmicutes | Clostridia | Clostridiales | Peptostreptococcaceae | 5 | 3182 | termite gut homogenate clone Rs-Q64 bacterium | ≤0.01 | <0.05 | 1107 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3250 | Streptococcus bovis str. B315 | <0.001 | <0.01 | 4284 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3251 | Streptococcus cristatus str. ATCC 51100 | <0.01 | <0.05 | 3986 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3253 | derived cheese sample clone 32CR | <0.02 | <0.05 | 2680 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3258 | Staphylococcus auricularis str. MAFF911484 ATCC33753T | <0.01 | <0.05 | 1525 |
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | 1 | 3261 | Enterococcus mundtii str. LMG 10748 | <0.02 | <0.05 | 2560 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3283 | Bacillus niacini str. IFO15566 | <0.01 | <0.05 | 1201 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3284 | <0.01 | <0.05 | 1347 | |
Firmicutes | Bacilli | Bacillales | Caryophanaceae | 1 | 3285 | Caryophanon latum str. DSM 14151 | <0.01 | <0.05 | 1499 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3287 | tongue dorsum scrapings clone FP015 | <0.01 | <0.05 | 3582 |
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | 1 | 3288 | Isolation and identification hyper-ammonia producing swine storage pits manure | <0.01 | <0.05 | 2528 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3290 | Streptococcus mitis str. Sm91 | ≤0.01 | <0.05 | 3971 |
Firmicutes | Bacilli | Bacillales | Paenibacillaceae | 1 | 3299 | Brevibacillus borstelensis str. LMG 15536 | <0.02 | <0.05 | 1035 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3313 | Streptococcus salivarius str. ATCC 7073 | <0.001 | <0.01 | 3189 |
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | 1 | 3318 | Enterococcus ratti str. ATCC 700914 | <0.02 | <0.05 | 2272 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3323 | Trichococcus flocculiformis str. DSM 2094 | <0.01 | <0.05 | 1431 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3326 | Nostocoida limicola I str. Ben206 | <0.01 | <0.05 | 2363 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3328 | Pseudobacillus carolinae | <0.001 | <0.01 | 2370 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3330 | Lactobacillus kitasatonis str. KM9212 | <0.02 | <0.05 | 1389 |
Firmicutes | Bacilli | Bacillales | Sporolactobacillaceae | 1 | 3365 | Bacillus sp. clone ML615J-19 | <0.001 | <0.01 | 1757 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3386 | feedlot manure clone B87 | <0.01 | <0.05 | 2321 |
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | 1 | 3392 | Vagococcus lutrae str. m1134/97/1; CCUG 39187 | <0.001 | ≤0.01 | 1976 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3397 | Streptococcus macedonicus str. ACA-DC 206 LAB617 | <0.01 | <0.05 | 4011 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3418 | Lactobacillus subsp. aviarius | <0.01 | <0.05 | 3036 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3419 | Bacillus algicola str. KMM 3737 | <0.01 | <0.05 | 1590 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3422 | Streptococcus thermophilus str. DSM 20617 | <0.01 | <0.05 | 3243 |
Firmicutes | Bacilli | Lactobacillales | Enterococcaceae | 1 | 3433 | Tetragenococcus muriaticus | <0.01 | <0.05 | 2715 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3446 | Streptococcus bovis str. HJ50 | <0.01 | <0.05 | 3846 |
Firmicutes | Bacilli | Lactobacillales | Unclassified | 1 | 3481 | <0.01 | <0.05 | 2102 | |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3489 | Bacillus silvestris str. SAFN-010 | <0.001 | <0.01 | 1206 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3492 | Bacillus subtilis str. IAM 12118T | <0.01 | <0.05 | 1320 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3494 | Micrococcus luteus B-P 26 | ≤0.01 | <0.05 | 1334 |
Firmicutes | Bacilli | Lactobacillales | Leuconostocaceae | 1 | 3497 | Weissella koreensis S-5673 | <0.02 | <0.05 | 1457 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3499 | Streptococcus constellatus str. ATCC27823 | <0.01 | <0.05 | 4476 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3504 | Marinilactibacillus psychrotolerans str. O21 | <0.01 | <0.05 | 1505 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3517 | Planococcus maritimus str. TF-9 | <0.01 | <0.05 | 1358 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3521 | Pediococcus inopinatus str. DSM 20285 | <0.001 | <0.05 | 1122 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3526 | Lactobacillus sakei | <0.02 | <0.05 | 1609 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3545 | <0.01 | <0.05 | 1372 | |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3547 | Lactobacillus frumenti str. TMW 1.666 | <0.01 | <0.05 | 1491 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3550 | Bacillus megaterium str. QM B1551 | ≤0.001 | <0.05 | 1620 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3553 | Desemzia incerta str. DSM 20581 | <0.001 | <0.01 | 1553 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3560 | Streptococcus gallinaceus str. CCUG 42692 | <0.001 | <0.01 | 2835 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3566 | Lactobacillus pontis str. LTH 2587 | <0.01 | <0.05 | 2320 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3569 | Staphylococcus saprophyticus | <0.01 | <0.05 | 1391 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3588 | Streptococcus downei str. ATCC 33748 | <0.01 | <0.05 | 2440 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3589 | Bacillus senegalensis str. RS8; CIP 106 669 | ≤0.02 | <0.05 | 1198 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3592 | Staphylococcus caprae str. DSM 20608 | ≤0.01 | <0.05 | 1322 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3605 | <0.01 | <0.05 | 1472 | |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3612 | Bacillus schlegelii str. ATCC 43741T | <0.01 | <0.05 | 1224 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3628 | Staphylococcus haemolyticus str. CCM2737 | <0.01 | <0.05 | 1572 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3629 | Streptococcus mutans str. UA96 | <0.01 | <0.05 | 1466 |
Firmicutes | Bacilli | Bacillales | Halobacillaceae | 1 | 3633 | Bacillus clausii str. GMBAE 42 | <0.001 | <0.01 | 2363 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3634 | Lactobacillus letivazi str. JCL3994 | <0.01 | <0.05 | 1586 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3638 | Staphylococcus sp str. AG-30 | <0.01 | <0.05 | 1359 |
Firmicutes | Bacilli | Bacillales | Paenibacillaceae | 1 | 3641 | Brevibacillus sp. MN 47.2a | <0.02 | <0.05 | 1735 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3654 | Staphylococcus pettenkoferi str. B3117 | <0.01 | <0.05 | 1310 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3661 | Bacillus sp. str. 2216.25.2 | <0.01 | <0.05 | 1593 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3675 | Bacillus mojavensis str. M-1 | <0.01 | <0.05 | 1535 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3684 | Staphylococcus sciuri | <0.02 | <0.05 | 1324 |
Firmicutes | Bacilli | Bacillales | Halobacillaceae | 1 | 3702 | Amphibacillus xylanus str. DSM 6626 | ≤0.01 | <0.05 | 1523 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3703 | Lactobacillus salivarius str. RA2115 | <0.01 | <0.05 | 1636 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3706 | Bacillus sonorensis str. NRRL B-23155 | <0.02 | <0.05 | 1324 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3722 | Lactococcus Il1403 subsp. lactis str. IL1403 | ≤0.001 | <0.05 | 2673 |
Firmicutes | Bacilli | Bacillales | Sporolactobacillaceae | 1 | 3747 | Bacillus sp. str. C-59-2 | <0.001 | <0.01 | 1959 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3753 | Streptococcus suis str. 8074 | <0.02 | <0.05 | 3463 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3767 | Lactobacillus suebicus str. CECT 5917T | <0.01 | <0.05 | 2031 |
Firmicutes | Bacilli | Lactobacillales | Lactobacillaceae | 1 | 3768 | Lactobacillus perolens str. L532 | <0.001 | <0.001 | 1593 |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3794 | <0.01 | <0.05 | 1324 | |
Firmicutes | Bacilli | Bacillales | Staphylococcaceae | 1 | 3822 | Staphylococcus succinus str. SB72 | <0.01 | <0.05 | 1358 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3827 | Bacillus acidogenesis str. 105-2 | <0.01 | <0.05 | 1996 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3831 | Bacillus licheniformis str. KL-068 | <0.01 | <0.05 | 2057 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3833 | Carnobacterium alterfunditum | <0.001 | <0.01 | 2781 |
Firmicutes | Bacilli | Lactobacillales | Aerococcaceae | 1 | 3840 | Trichococcus pasteurii str. KoTa2 | <0.001 | <0.01 | 2656 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3869 | Streptococcus equi subsp. zooepidemicus str. Tokyo1291 subsp. | ≤0.01 | <0.05 | 1766 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3900 | Bacillus licheniformis str. DSM 13 | <0.01 | <0.05 | 1261 |
Firmicutes | Bacilli | Lactobacillales | Streptococcaceae | 1 | 3906 | Streptococcus bovis str.ATCC 43143 | <0.001 | <0.01 | 4284 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3909 | Bacillus subtilis subsp. Marburg str. 168 | <0.01 | <0.05 | 1367 |
Firmicutes | Bacilli | Bacillales | Bacillaceae | 1 | 3918 | Bacillus subtilis | <0.001 | <0.01 | 1486 |
Firmicutes | Mollicutes | Anaeroplasmatales | Erysipelotrichaceae | 3 | 3965 | TCE-contaminated site clone ccslm238 | ≤0.01 | <0.05 | 1844 |
Firmicutes | Mollicutes | Anaeroplasmatales | Erysipelotrichaceae | 3 | 3981 | phototrophic sludge clone PSB-M-3 | <0.01 | <0.05 | 1361 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4180 | termite gut homogenate clone Rs-M23 bacterium | <0.01 | <0.05 | 1383 |
Firmicutes | Clostridia | Unclassified | Unclassified | 7 | 4216 | <0.001 | <0.01 | 2447 | |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4266 | termite gut homogenate clone Rs-M86 bacterium | <0.01 | <0.05 | 1302 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4281 | granular sludge clone UASB_brew_B86 | ≤0.001 | <0.05 | 1333 |
Firmicutes | gut clone group | Unclassified | Unclassified | 1 | 4298 | human mouth clone P4PA_66 | <0.01 | <0.05 | 1991 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4306 | UASB reactor granular sludge clone PD-UASB-4 bacterium | <0.01 | <0.05 | 1483 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4321 | termite gut homogenate clone Rs-C76 bacterium | ≤0.01 | <0.05 | 1362 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4331 | granular sludge clone UASB_brew_B84 | <0.01 | <0.05 | 1091 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4339 | Clostridium chauvoei str. ATCC 10092T | <0.02 | <0.05 | 1542 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4369 | termite gut homogenate clone Rs-N73 bacterium | <0.01 | <0.05 | 1579 |
Natronoanaerobium | Unclassified | Unclassified | Unclassified | 1 | 4377 | Mono Lake at depth 35 m station 6 July 2000 clone ML635J-65 G + C | <0.01 | <0.05 | 1585 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4418 | termite gut homogenate clone Rs-H18 bacterium | <0.02 | <0.05 | 1173 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4434 | termite gut homogenate clone Rs-K11 bacterium | <0.01 | <0.05 | 1298 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4475 | termite gut homogenate clone Rs-N02 bacterium | <0.001 | <0.01 | 1853 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4477 | termite gut homogenate clone Rs-N85 bacterium | 0.01 | <0.05 | 1505 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4507 | termite gut homogenate clone Rs-N21 bacterium | ≤0.01 | <0.05 | 1169 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4510 | termite gut homogenate clone Rs-Q53 bacterium | <0.02 | <0.05 | 1896 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4512 | granular sludge clone UASB_brew_B25 | <0.01 | <0.05 | 1006 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4514 | termite gut homogenate clone Rs-B34 bacterium | ≤0.001 | <0.05 | 1800 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4524 | termite gut clone Rs-093 | <0.02 | <0.05 | 1269 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4533 | termite gut homogenate clone Rs-N06 bacterium | <0.01 | <0.05 | 1671 |
Firmicutes | Unclassified | Unclassified | Unclassified | 8 | 4536 | Mono Lake at depth 35 m station 6 July 2000 clone ML635J-14 G + C | <0.01 | <0.05 | 1005 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4540 | termite gut homogenate clone Rs-M18 bacterium | <0.01 | <0.05 | 1962 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4598 | Clostridium sardiniense str. DSM 600 | <0.02 | <0.05 | 1253 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4607 | Clostridium novyi str. NCTC538 | <0.01 | <0.05 | 1082 |
Firmicutes | Clostridia | Clostridiales | Lachnospiraceae | 5 | 4613 | rumen clone 3C0d-3 | <0.02 | <0.05 | 1321 |
Firmicutes | gut clone group | Unclassified | Unclassified | 1 | 4616 | rumen clone F23-C12 | <0.01 | <0.05 | 2628 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4622 | termite gut clone Rs-L36 | ≤0.01 | <0.05 | 1112 |
Firmicutes | Clostridia | Clostridiales | Clostridiaceae | 12 | 4638 | <0.01 | <0.05 | 2515 | |
Cyanobacteria | Unclassified | Unclassified | Unclassified | 9 | 5038 | Rumen isolate str. YS2 | <0.001 | <0.01 | 1724 |
Bacteroidetes | Bacteroidetes | Unclassified | Unclassified | 15 | 5481 | marine sediment above hydrate ridge clone Hyd89-72 bacterium | <0.02 | <0.05 | 2056 |
Bacteroidetes | Sphingobacteria | Sphingobacteriales | Flexibacteraceae | 19 | 5542 | Cytophaga sp. I-1787 | <0.01 | <0.05 | 2304 |
Bacteroidetes | Bacteroidetes | Bacteroidales | Unclassified | 15 | 5783 | Mono Lake at depth 35 m station 6 July 2000 clone ML635J-15 bacterium | <0.01 | <0.05 | 1032 |
Bacteroidetes | Bacteroidetes | Bacteroidales | Unclassified | 15 | 5874 | Paralvinella palmiformis mucus secretions clone P. palm 53 bacterium | <0.02 | <0.05 | 1805 |
Bacteroidetes | Sphingobacteria | Sphingobacteriales | Flexibacteraceae | 19 | 6124 | Flexibacter flexilis subsp. pelliculosus str. IFO 16028 subsp. | <0.001 | <0.01 | 1387 |
Spirochaetes | Spirochaetes | Spirochaetales | Spirochaetaceae | 1 | 6459 | Spirochaeta sp. str. BHI80-158 | <0.001 | ≤0.01 | 2558 |
Proteobacteria | Deltaproteobacteria | Desulfobacterales | Unclassified | 3 | 9813 | hydrothermal sediment clone AF420340 | <0.01 | <0.05 | 1453 |
Proteobacteria | Deltaproteobacteria | Desulfobacterales | Desulfobacteraceae | 5 | 9875 | hydrothermal sediment clone AF420354 | <0.01 | <0.05 | 1147 |
Proteobacteria | Deltaproteobacteria | Desulfuromonadales | Geobacteraceae | 1 | 10171 | <0.01 | <0.05 | 1375 | |
Proteobacteria | Deltaproteobacteria | Desulfobacterales | Desulfoarculaceae | 2 | 10227 | marine sediment clone Bol11 | <0.01 | <0.05 | 1549 |
Proteobacteria | Deltaproteobacteria | Desulfobacterales | Desulfobacteraceae | 5 | 10319 | sulfate-reducing habitat clone SLM-CP-116 | <0.01 | <0.05 | 1235 |
S-F, Subfamily identification; bTaxon ID, PhyloChip Taxon identification number; cRepresentative species, Taxon bacterial species identifier.