Table 2.

Some associations masked by unfaithfulness from the WTCCC data set.

Disease	SNP Xp	Single-locus P -value	SNP Xq	Single-locus P -value	Chr	Gene	Unfaithfulness P -value
BD	rs668860	0.053	rs10873672	0.245	1	MCOLN2	4.885 × 10-15
	rs668860	0.053	rs6691970	0.216	1	MCOLN2	6.217 × 10-15
CAD	rs7162070	0.867	rs16969478	0.160	15	FSIP1	5.551 × 10-15
	rs1876853	0.903	rs16969478	0.160	15	FSIP1	2.310 × 10-13
	rs8029602	0.853	rs16969478	0.160	15	FSIP1	5.274 × 10-14
	rs16969475	0.823	rs16969478	0.160	15	FSIP1	1.259 × 10-13
T1D	rs1058318	0.074	rs2252745	0.840	6	GNL1, PPP1R10	1.326 × 10-12
HT	rs2300390	0.460	rs12482676	0.061	21	RCAN1	2.442 × 10-15