Table 5.
Polymorphism statistics for 8 candidate cis-regulatory regions in 18 Lake Malawi cichlid species
| Opsin | Length (bp) | S1 | s2 | H3 | π4 | C5 | TD6 | CRX7 |
|---|---|---|---|---|---|---|---|---|
| SWS1 | 1000 | 16 | 5 | 17 | 0.0020 | 0.983 | -1.4424 | 1 |
| SWS2B | 694 | 2 | 1 | 3 | 0.0008 | 0.997 | 0.2951 | 0 |
| SWS2A | 1000 | 7 | 1 | 6 | 0.0010 | 0.992 | -1.1518 | 2 |
| RH2B | 950 | 17 | 3 | 15 | 0.0022 | 0.982 | -1.1050 | 2 |
| LWS | 956 | 12 | 2 | 11 | 0.0012 | 0.987 | -1.2394 | 0 |
| CNE 10 | 882 | 12 | 1 | 10 | 0.0021 | 0.986 | -0.2311 | 0 |
| SWS2B UTR | 442 | 2 | 0 | 4 | 0.0013 | 0.995 | 0.4486 | NA |
| LWS UTR* | 436 | 1 | 0 | 2 | 0.0006 | 0.998 | 0.0298 | NA |
1 Total number of segregating sites
2 Total number of segregating sites that are singletons
3 Total number of haplotypes
4 Nucleotide diversity
5 Sequence conservation
6 Tajima's D
7 Total number of segregating sites that interrupt predicted CRX binding sites
* Statistics presented for in/del polymorphism