Table 6.
Results of allelic association between SNPs underlying peaks of nucleotide diversity and opsin expression in 18 Lake Malawi cichlid species
| Polymorphism distance from TSS | Type | MAF1 | r2 | t-value | P-value |
|---|---|---|---|---|---|
| SWS1 -54 | C*T | 0.222 | -0.279 | -0.911 | > 0.05 |
| SWS2B -208 | C*T | 0.417 | < 0.001 | 0.003 | > 0.05 |
| SWS2B -55 | 1 bp indel | 0.444 | 0.240 | 0.789 | > 0.05 |
| SWS2A -224* | C*T | 0.222 | 0.127 | 1.037 | > 0.05 |
| SWS2A -217* | 8 bp indel | 0.194 | 0.392 | 1.841 | 0.087 |
| RH2B -308 | C*G | 0.167 | -0.245 | -0.893 | > 0.05 |
| RH2B -161 | C*T | 0.111 | 0.263 | 3.447 | 0.004 |
| LWS -208 | C*T | 0.167 | 0.355 | 1.002 | > 0.05 |
| CNE-7 183 | A*T | 0.222 | 0.055 | -0.673 | > 0.05 |
| CNE-7 570 | C*T | 0.417 | 0.608 | 2.237 | 0.041 |
| SWS2B-UTR 197 | A*C | 0.306 | 0.349 | 1.264 | > 0.05 |
* These polymorphisms interrupt CRX transcription factor binding sites