Table 1.
Primers used for Sanger sequence finishing of the Asclepias syriaca chloroplast genome
Region spanned | Orientation | Primer Sequence (5'-3') | Annealing Temp. (°C) |
---|---|---|---|
ndhC-trnV | FORWARD | GCTCGATTCGAATTGTCAAGTCATCC | 57 |
REVERSE | AGGCCCTCCGATAGGATACTCAAA | ||
trnQ-psbK | FORWARD | AAACCCGTTGCCTTACCACTTG | 57 |
REVERSE | CACGGGTATGACTGGCATAACATC | ||
rbcL-accD | FORWARD | ATCCGTGAGGCTAGCAAATGGAGT | 59 |
REVERSE | AGGCCCTAGTCCACCAATATGGAA | ||
accD | FORWARD | TAATAAACAATGCTAGCGATTGGG | 57, 61 |
REVERSE | TACAATTAGATCTTAGGTCGCCAA | ||
FORWARD | GAACCTACACGCAAGCTAGTG | ||
FORWARD | TAAATGGCATTCCCATAGCAGT | ||
FORWARD | TGATATCGATGCGCAAGCTAG | ||
REVERSE | CCTATAAATGTAACTAGCACTGCA | ||
REVERSE | GGTAGCGTATTCAATCAAACGG | ||
REVERSE | CCAAGTATCCGGATCGATCGA | ||
clpP | FORWARD | AATTGTATACATAATGGGCTGGT | 57 |
REVERSE | TATTTATTCATTGCCCTGTTCGT | ||
FORWARD | AACTACTATGATGGCTCCGTTG | ||
FORWARD | CATAAGACCCATAATTTGATTTGAG | ||
FORWARD | GTTTATGCTGTACTCCGGGTA | ||
REVERSE | GGTCAATTTTATTGTAAAGCCGTAT | ||
REVERSE | TATGCAATTTATAAAACCAGATGTCC | ||
REVERSE | GTGAATTGAAAAAGTAGAACGTCAT | ||
rps8 -rpl14 | FORWARD | CTCAGCAATAGTGTCTCTGCCCAT | 57 |
REVERSE | AGAGCTGTAATTGTGCGTACCCGT | ||
ycf1-ndhF | FORWARD | TCCATCCATATCCCAATTCCATTCA | 55 |
REVERSE | GGGCATTAGAGGATTGGCTAAAGT | ||
FORWARD | ACGCCTCTGCATCTAGTATTG | ||
REVERSE | GGATCTTTTGTCGAGAGCTTC | ||
ndhG-ndhI | FORWARD | ATGCGGGCGGGTTGATATATGGTT | 59 |
REVERSE | ATTGCTTTGGGTCGGTTACCAACGTC | ||
rps15-ycf1 | FORWARD | GGCCTAATTGATACCTCAGCGGTT | 58 |
REVERSE | TTATCAACGATGGAACCGCCCACT | ||
FORWARD | TATGTCTCGGTCTAGGAGAGG | ||
REVERSE | TGTACAAGTTGATTCAGGCGA |
For each region, additional primers appearing after the two original PCR primers are internal sequencing primers.