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. 2011 May 4;12:211. doi: 10.1186/1471-2164-12-211

Table 1.

Primers used for Sanger sequence finishing of the Asclepias syriaca chloroplast genome

Region spanned Orientation Primer Sequence (5'-3') Annealing Temp. (°C)
ndhC-trnV FORWARD GCTCGATTCGAATTGTCAAGTCATCC 57
REVERSE AGGCCCTCCGATAGGATACTCAAA

trnQ-psbK FORWARD AAACCCGTTGCCTTACCACTTG 57
REVERSE CACGGGTATGACTGGCATAACATC

rbcL-accD FORWARD ATCCGTGAGGCTAGCAAATGGAGT 59
REVERSE AGGCCCTAGTCCACCAATATGGAA

accD FORWARD TAATAAACAATGCTAGCGATTGGG 57, 61
REVERSE TACAATTAGATCTTAGGTCGCCAA
FORWARD GAACCTACACGCAAGCTAGTG
FORWARD TAAATGGCATTCCCATAGCAGT
FORWARD TGATATCGATGCGCAAGCTAG
REVERSE CCTATAAATGTAACTAGCACTGCA
REVERSE GGTAGCGTATTCAATCAAACGG
REVERSE CCAAGTATCCGGATCGATCGA

clpP FORWARD AATTGTATACATAATGGGCTGGT 57
REVERSE TATTTATTCATTGCCCTGTTCGT
FORWARD AACTACTATGATGGCTCCGTTG
FORWARD CATAAGACCCATAATTTGATTTGAG
FORWARD GTTTATGCTGTACTCCGGGTA
REVERSE GGTCAATTTTATTGTAAAGCCGTAT
REVERSE TATGCAATTTATAAAACCAGATGTCC
REVERSE GTGAATTGAAAAAGTAGAACGTCAT

rps8 -rpl14 FORWARD CTCAGCAATAGTGTCTCTGCCCAT 57
REVERSE AGAGCTGTAATTGTGCGTACCCGT

ycf1-ndhF FORWARD TCCATCCATATCCCAATTCCATTCA 55
REVERSE GGGCATTAGAGGATTGGCTAAAGT
FORWARD ACGCCTCTGCATCTAGTATTG
REVERSE GGATCTTTTGTCGAGAGCTTC

ndhG-ndhI FORWARD ATGCGGGCGGGTTGATATATGGTT 59
REVERSE ATTGCTTTGGGTCGGTTACCAACGTC

rps15-ycf1 FORWARD GGCCTAATTGATACCTCAGCGGTT 58
REVERSE TTATCAACGATGGAACCGCCCACT
FORWARD TATGTCTCGGTCTAGGAGAGG
REVERSE TGTACAAGTTGATTCAGGCGA

For each region, additional primers appearing after the two original PCR primers are internal sequencing primers.