Table 1.
SNP | Major Allele | Common Allele Frequency | Expected Frequency (dbSNP) b | P Value b | |||||
---|---|---|---|---|---|---|---|---|---|
Location | All MM Patients; N = 96 | Cauc Amer (≥L1); N = 24 | Mex Amer (≥L1); N = 24 | Cauc Amer (<L1); N = 24 | Mex Amer (<L1); N = 24 | ||||
rs11537639 | Exon 1 | A | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | NA | – |
rs11537640 | Exon 1 | A | 0.841 | 0.875 | 0.738 | 0.833 | 0.870 | 0.810 | NS |
rs28365848 | Exon 1 | A | 0.833 | 0.875 | 0.738 | 0.833 | 0.875 | 0.780 | NS |
rs1385129 | Exon 2 | G | 0.745 | 0.833 | 0.625 | 0.792 | 0.729 | 0.750 | NS |
rs11537641 | Exon 4 | C | 0.849 | 0.854 | 0.833 | 0.854 | 0.854 | 0.770 | NS |
rs2229682 | Exon 5 | G | 0.839 | 0.896 | 0.813 | 0.792 | 0.854 | 0.825 | NS |
rs2229681 | Exon 8 | C | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | NS |
rs2306662 | Exon 8 | A | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | NS |
rs2236574 | Exon 9 | C | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | NS |
rs13306758 | Exon 10 | C | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | NS |
Abbreviations: NA, not available; NS, not significant; MM, myelomeningocele; SNPs, single nucleotide polymorphisms; Cauc Amer, Caucasian American; Mex Amer, Mexican American.
a Expected frequency from dbSNP in CEU samples.
b P value indicates 2-sided Fisher exact test comparing patients with MM to the expected frequency.