Table 3.
The 5 and 25% quantiles of the RMSD distributions for decoys generated by our method TreeFolder and BARNACLE
| BARNACLE |
TreeFolder |
|||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| PDB ID | Len | Bps | 5% | 25% | 5% | 25% | # Energy <1 | 5% | 25% | # Energy <2 |
| 1esy | 19 | 6 | 2.99 | 3.28 | 2.19 | 2.60 | 577 | 2.25 | 2.78 | 1102 |
| 1kka | 17 | 6 | 4.40 | 5.02 | 3.75 | 4.30 | 349 | 3.8 | 4.39 | 776 |
| 1l2x | 27 | 8 | 5.43 | 6.88 | – | – | 0 | 5.44 | 8.08 | 5 |
| 1q9a | 27 | 6 | 4.80 | 5.42 | 4.55 | 5.05 | 486 | 4.61 | 5.07 | 1025 |
| 1qwa | 21 | 8 | 4.06 | 4.64 | 3.65 | 4.26 | 407 | 3.9 | 4.51 | 884 |
| 1xjr | 46 | 15 | 10.41 | 11.01 | 8.50 | 9.43 | 22 | 8.84 | 9.79 | 540 |
| 1zih | 12 | 4 | 1.72 | 2.16 | 1.32 | 1.84 | 1721 | 1.36 | 1.88 | 1931 |
| 28sp | 28 | 8 | 3.23 | 3.76 | 2.88 | 3.43 | 152 | 2.93 | 3.58 | 563 |
| 2a43 | 26 | 7 | 4.72 | 6.08 | – | – | 0 | 4.64 | 5.48 | 26 |
| 2f88 | 34 | 13 | 3.82 | 4.41 | 3.73 | 3.73 | 1 | 3.85 | 4.57 | 130 |
Bold numbers indicate better distributions. Columns ‘#energy < 1’ and ‘#energy < 2’ list the number of decoys with energy <1 and <2, respectively. ‘Bps’ is the number of base pairings.