Table 1.

Results from the full HSIC model

SNPs	Pairs	Runtime [s]	Interactions [1/s]	Speedup factor versus Single CPU
4000	7 998 000	111.79	71 546.78	89.93
3500	6 123 250	86.27	70 976.10	88.72
3000	4 498 500	63.86	70 444.26	88.06
2500	3 123 750	44.73	69 834.12	87.29
2000	2 000 000	27.16	73 600.88	92.00
1500	1 124 250	16.86	66 669.63	83.34
1000	499 500	7.87	63 476.93	79.35