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. 2011 Jun 14;27(13):i214–i221. doi: 10.1093/bioinformatics/btr218

Table 2.

Hamilton Rating Scale—Data and performance summary

HSIC runtime FastEpistasis runtime
GPU [min] 48 CPUs [min]
2 408.92 3 440.30
(~40 h) (~57 h)

Checking 536 750 SNPs (1.44×1011 pairs) in 491 subjects. 1 137 450 interactions below a threshold of P<10−5 are found.