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. 2011 Jun 14;27(13):i230–i238. doi: 10.1093/bioinformatics/btr246

Table 1.

Runtimes for producing a segmentation map

Dataset (n×p) Method Neighborhood radius
r=2 r=3 r=4
Rat brain (20185×71) SA 17 s 35 s 49 s
SASA 19 s 32 s 49 s
k-means* 10 s
Denoising+HDDC* 17 min
Denoising+kmeans* 2 min
PCA+hierarchical* 25 s

Tumor (27 960×62) SA 23 s 41 s 62 s
SASA 25 s 39 s 62 s

Runtimes on ThinkPad laptop with Intel i5 Core 2.4 GHz; data pre-processing and peak picking are not included; q=20, k=10.

*No neighborhood is exploited.