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. 2011 Jun 14;27(13):i186–i195. doi: 10.1093/bioinformatics/btr225

Fig. 3.

Fig. 3.

Scheme of E.coli central carbon metabolism. This map, showing metabolites (bold fonts) and genes (italic) is adapted from (Ishii et al., 2007). Abbreviations of metabolites are glucose (Glc), glucose 6-phosphate (G6P), fructose 6-phosphate (F6P), fructose 1-6-biphosphate (FBP), dihydroxyacetone phosphate (DHAP), glyceraldehyde 3-phosphate (G3P), 3-phosphoglycerate (3PG), phosphoenolpyruvate (PEP), pyruvate (Pyr), 6-phosphogluconate (6PG), 2-keto-3-deoxy-6-phospho-gluconate (2KDPG), ribulose 5-phosphate (Ru5P), ribose 5-phosphate (R5P), xylulose 5-phosphate (X5P), sedoheptulose 7-phosphate (S7P), erythrose 4-phosphate (E4P), oxaloacetate (OAA), citrate (Cit), isocitrate (IsoCit), 2-keto-glutarate (2KG), succinate-CoA (SuccoA), succinate (Suc), fumarate (Fum), malate (Mal), glyoxylate (Glyox), acetyl-CoA (AcoA), acetylphosphate (Acp) and acetate (Ace). Cofactors impacting the reactions are not shown. The gene names are separated by a comma in the case of isoenzymes, by a colon for enzyme complexes, and by a semicolon when the enzymes catalyze reactions that have been lumped together in the model.