Table 2.

Number of variant positions found in each pool

	Cases 1	Cases 2	Controls 1	Controls 2	Total
vipR			–		371
CRISP			–		9425
Poisson	656	644	701	606	1223
VarScan	6711	6993	7582	6715	9856
vipR			–		56
CRISP			–		29
Poisson	31	31	33	28	42
VarScan	63	54	75	64	100

The upper part of the table lists the number of SNPs found in the resequenced region. The lower part lists the number of small deletions identified in the same region.