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. 2011 Jun 14;27(13):i77–i84. doi: 10.1093/bioinformatics/btr205

Table 3.

Performance on 82 validated variant positions of set2

TP FP TN FN Accuracy Sensitivity Specificity Precision
vipR 39 11 24 8 0.77 0.83 0.69 0.78
CRISP 40 15 20 7 0.73 0.85 0.57 0.73
Poisson 30 14 21 17 0.62 0.64 0.60 0.68
VarScan 43 28 7 4 0.61 0.91 0.20 0.61

P, positives; N, negatives; TP, true positives; FP, false positives; TN, true negatives; FN, false negatives. accuracy, Inline graphic; sensitivity, Inline graphic; specificity, Inline graphic; precision, Inline graphic.