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. 2011 Jan;18(1):109–127. doi: 10.1089/cmb.2009.0231

Table 1.

Proposal Distribution for the Two-Locus Infinite Sites Model with Recombinationa

Case Hk1 p(Hk1|Hk) IS weight
(R) Inline graphic Inline graphic Inline graphic
(i) Inline graphic Inline graphic Inline graphic
(ii) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(iii) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(iv) Inline graphic Inline graphic Inline graphic
(v) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(vi) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(vii) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(viii) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(ix) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
(x) Inline graphic Inline graphic Inline graphic
  Inline graphic Inline graphic Inline graphic
a

Notation is defined in Appendix A. The expression for Inline graphic is given by (9), Inline graphic is given by (10), and Inline graphic is given by (11).