Table 2.

Comparison of the SNP selection methods

	delta	Global Wright's FST	Pairwise Wright's FST	Global W&C'S FST	Pairwise W&C'S FST	PCA [1:8]
delta		0.589	0.884	0.370	0.819	0.928
global Wright's FST	98		0.847	0.462	0.821	0.682
pairwise Wright's FST	381	151		0.448	0.952	0.888
global W&C FST	59	49	63		0.461	0.408
pairwise W&C FST	306	156	367	67		0.810
PCA [1:8]	273	101	274	66	229

The upper-triangle contains the Spearman rank's correlation results between each 40,483 SNPs ranked for information content by each selection method. The lower-triangle contains the amount of overlap for the top 500 ranked SNP markers between each selection method.