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. 2011 Mar;18(3):229–251. doi: 10.1177/1933719110386241

Table 4.

Top 50 Canonical Pathways

Ingenuity Canonical Pathways −log(P Value) P Value Ratio Molecules
Pathways regulated in proliferative endometrium (PE) from severe endometriosis vs mild PE
 Neuregulin signaling 6.25E00 .000001 0.11 ITGB1, BAD, PTPN11, HSP90AB1, RRAS, PIK3R1, DCN, HSP90AA1, PDPK1, PTEN, EGFR
 Prostate cancer signaling 4.83E00 .000015 0.09 BAD, TFDP1, PIK3C2A, HSP90AB1, RRAS, PIK3R1, HSP90AA1, PDPK1, PTEN
 Non-small cell lung cancer signaling 4.64E00 .000023 0.10 CDKN2A, BAD, TFDP1, PIK3C2A, RRAS, PIK3R1, PDPK1, EGFR
 PI3K/AKT signaling 4.35E00 .000045 0.07 ITGB1, JAK1, BAD, HSP90AB1, RRAS, PIK3R1, YWHAZ, HSP90AA1, PDPK1, PTEN
 Chronic myeloid leukemia signaling 4.27E00 .000054 0.09 CDKN2A, CTBP1, BAD, TFDP1, PTPN11, PIK3C2A, RRAS, PIK3R1, CBLC
 Myc-mediated apoptosis signaling 4.17E00 .000068 0.12 CDKN2A, BAD, PIK3C2A, RRAS, PIK3R1, YWHAZ, BAX
 Melanoma signaling 3.98E00 .000105 0.13 CDKN2A, BAD, PIK3C2A, RRAS, PIK3R1, PTEN
 IGF-1 signaling 3.69E00 .000204 0.08 BAD, PTPN11, PIK3C2A, RRAS, PIK3R1, YWHAZ, PDPK1, IGFBP5
 P70S6K signaling 3.51E00 .000309 0.07 GNAI2, JAK1, BAD, PIK3C2A, RRAS, PIK3R1, YWHAZ, PDPK1, EGFR
 Endometrial cancer signaling 3.45E00 .000355 0.11 BAD, PIK3C2A, RRAS, PIK3R1, PDPK1, PTEN
 Docosahexaenoic acid (DHA) signaling 3.39E00 .000407 0.11 BAD, PIK3C2A, PIK3R1, PDPK1, BAX
 FAK signaling 3.1E00 .000794 0.07 ITGB1, PIK3C2A, RRAS, PIK3R1, PDPK1, PTEN, EGFR
 PTEN signaling 2.89E00 .001288 0.07 ITGB1, BAD, RRAS, PIK3R1, PDPK1, PTEN, EGFR
 FLT3 signaling in hematopoietic progenitor cells 2.83E00 .001479 0.08 BAD, PTPN11, PIK3C2A, RRAS, PIK3R1, PDPK1
 Glioma signaling 2.75E00 .001778 0.06 CDKN2A, TFDP1, PIK3C2A, RRAS, PIK3R1, PTEN, EGFR
 CNTF signaling 2.75E00 .001778 0.09 JAK1, PTPN11, PIK3C2A, RRAS, PIK3R1
 Insulin receptor signaling 2.68E00 .002089 0.06 JAK1, BAD, PTPN11, PIK3C2A, RRAS, PIK3R1, PDPK1, PTEN
 Pancreatic adenocarcinoma signaling 2.6E00 .002512 0.06 CDKN2A, JAK1, BAD, TFDP1, PIK3C2A, PIK3R1, EGFR
 IL-2 signaling 2.56E00 .002754 0.09 JAK1, PTPN11, PIK3C2A, RRAS, PIK3R1
 Molecular mechanisms of cancer 2.49E00 .003236 0.04 CDKN2A, JAK1, PIK3C2A, BAD, TFDP1, RRAS, PIK3R1, MAP3K7IP2, GNA11, BAX, APH1A (includes EG:51107), GNAI2, PTPN11, FZD2
 FcγRIIB signaling in B lymphocytes 2.31E00 .004898 0.07 PIK3C2A, RRAS, PIK3R1, PDPK1
 JAK/Stat signaling 2.3E00 .005012 0.08 JAK1, PTPN11, PIK3C2A, RRAS, PIK3R1
 p53 signaling 2.29E00 .005129 0.07 CDKN2A, SCO2 (includes EG:9997), PIK3C2A, PIK3R1, BAX, PTEN
 Glucocorticoid receptor signaling 2.28E00 .005248 0.04 HSPA8, JAK1, PIK3C2A, HSP90AB1, RRAS, GTF2H4, PIK3R1, ANXA1, HSP90AA1, CCL5, UBE2I
 Angiopoietin signaling 2.27E00 .005370 0.07 BAD, PTPN11, PIK3C2A, RRAS, PIK3R1
 ERK5 signaling 2.24E00 .005754 0.07 BAD, PTPN11, RRAS, YWHAZ, EGFR
 Neurotrophin/TRK signaling 2.18E00 .006607 0.06 PTPN11, PIK3C2A, RRAS, PIK3R1, PDPK1
 IL-3 signaling 2.04E00 .009120 0.07 JAK1, BAD, PIK3C2A, RRAS, PIK3R1
 Agrin interactions at neuromuscular junction 2.04E00 .009120 0.07 ITGB1, RRAS, LAMB1, CTTN, EGFR
 EGF signaling 2.01E00 .009772 0.08 JAK1, PIK3C2A, PIK3R1, EGFR
 Aryl hydrocarbon receptor signaling 1.89E00 .012882 0.04 CDKN2A, NFIC, TFDP1, HSP90AB1, HSP90AA1, GSTT2, BAX
 14-3-3-mediated signaling 1.86E00 .013804 0.05 BAD, PIK3C2A, RRAS, PIK3R1, YWHAZ, BAX
 Aldosterone signaling in epithelial cells 1.83E00 .014791 0.05 HSPA8, PIK3C2A, PIK3R1, HSP90AA1, PDPK1
 EIF2 signaling 1.79E00 .016218 0.05 PIK3C2A, RRAS, PIK3R1, EIF4G3, PDPK1
 Thrombopoietin signaling 1.77E00 .016982 0.06 PTPN11, PIK3C2A, RRAS, PIK3R1
 Mitotic roles of polo-like kinase 1.77E00 .016982 0.06 ANAPC4, HSP90AB1, HSP90AA1, CDC16
 IL-9 signaling 1.73E00 .018621 0.08 JAK1, PIK3C2A, PIK3R1
 Bladder cancer signaling 1.69E00 .020417 0.05 CDKN2A, FGFR3, TFDP1, RRAS, EGFR
 Colorectal cancer metastasis signaling 1.68E00 .020893 0.04 JAK1, BAD, PIK3C2A, RRAS, PIK3R1, IFNGR1, BAX, FZD2, EGFR
 G beta gamma signaling 1.63E00 .023442 0.04 GNAI2, RRAS, GNA11, PDPK1, EGFR
 IL-15 signaling 1.6E00 .025119 0.06 JAK1, PIK3C2A, RRAS, PIK3R1
 Hypoxia signaling in the Cardiovascular system 1.58E00 .026303 0.06 HSP90AB1, HSP90AA1, PTEN, UBE2I
 GM-CSF signaling 1.58E00 .026303 0.06 PTPN11, PIK3C2A, RRAS, PIK3R1
 IL-4 signaling 1.53E00 .029512 0.06 JAK1, PIK3C2A, RRAS, PIK3R1
 Macropinocytosis signaling 1.53E00 .029512 0.06 ITGB1, PIK3C2A, RRAS, PIK3R1
 Erythropoietin signaling 1.51E00 .030903 0.05 PIK3C2A, RRAS, PIK3R1, PDPK1
 Fc Epsilon RI signaling 1.51E00 .030903 0.05 PTPN11, PIK3C2A, RRAS, PIK3R1, PDPK1
 Huntington disease signaling 1.48E00 .033113 0.03 HSPA8, PIK3C2A, PIK3R1, GNA11, STX16, PDPK1, BAX, EGFR
 HGF signaling 1.47E00 .033884 0.05 CDKN2A, PTPN11, PIK3C2A, RRAS, PIK3R1
 iCOS-iCOSL signaling in T Helper Cells 1.46E00 .034674 0.04 BAD, PIK3C2A, PIK3R1, PDPK1, PTEN
Pathways regulated in early secretory endometrium (ESE) from severe endometriosis vs mild ESE
 Complement system 3.54E00 .00029 0.19 CFD, SERPING1, C1S, CD55, C1QA, CD46, C1QB
 Hepatic fibrosis/hepatic stellate cell activation 2.92E00 .00120 0.10 VCAM1, FN1, PDGFA, IFNGR1, IGFBP5, BAX, CCL5, PGF, MYL9 (includes EG:10398), IGF1, TIMP1, IGFBP3, EGFR
 IL-8 signaling 2.72E00 .00191 0.08 NAPEPLD, VCAM1, PIK3C2A, RRAS, PIK3R1, BAX, IRAK1, PGF, EIF4EBP1, ROCK2, HMOX1, CCND2, RHOD, RHOF, EGFR
 Clathrin-mediated endocytosis signaling 2.71E00 .00195 0.08 ACTR2, PIK3C2A, PDGFA, PIK3R1, ITGB8, PGF, HSPA8, SNX9 (includes EG:51429), IGF1, FGF18, RAB5C, DAB2, CTTN, ITGB5
 Docosahexaenoic acid (DHA) signaling 2.67E00 .00214 0.13 BAD, FOXO1, PIK3C2A, PIK3R1, BIK, BAX
 IGF-1 signaling 2.65E00 .00224 0.10 IGFBP6, IGF1, BAD, FOXO1, PIK3C2A, RRAS, PIK3R1, IGFBP3, IGFBP5, SFN
 Prostate cancer signaling 2.41E00 .00389 0.09 BAD, TFDP1, FOXO1, PIK3C2A, HSP90AB1, RRAS, SRD5A1, PIK3R1, CREB3L4
 Myc-mediated apoptosis signaling 2.23E00 .00589 0.12 IGF1, BAD, PIK3C2A, RRAS, PIK3R1, BAX, SFN
 NRF2-mediated oxidative stress response 2.1E00 .00794 0.08 AKR7A2, MGST1, PIK3C2A, RRAS, PIK3R1, MAF, CLPP, MAFF, HMOX1, DNAJC4, GSTT2, GSTO2, FKBP5, PTPLAD1
 Ubiquinone biosynthesis 2.07E00 .00851 0.06 NDUFB11, NDUFS8, NDUFS7, MGMT, NDUFB7, NDUFA3, ALDH6A1
 IL-4 signaling 1.92E00 .01202 0.10 HLA-DQB1, SOCS1, HLA-DMA, JAK1, PIK3C2A, RRAS, PIK3R1
 VEGF signaling 1.81E00 .01549 0.08 ROCK2, BAD, FOXO1, PIK3C2A, RRAS, PIK3R1, SFN, PGF
 Pancreatic adenocarcinoma signaling 1.77E00 .01698 0.08 HMOX1, NAPEPLD, JAK1, BAD, TFDP1, PIK3C2A, PIK3R1, PGF, EGFR
 Virus entry via endocytic pathways 1.75E00 .01778 0.08 PIK3C2A, RRAS, PIK3R1, CD55, CAV1, ITGB8, ITGB5, FOLR1
 Caveolar-mediated endocytosis signaling 1.72E00 .01905 0.09 CD55, RAB5C, CAV1, COPE, ITGB8, ITGB5, EGFR
 Axonal guidance signaling 1.65E00 .02239 0.06 ACTR2, FZD10, PIK3C2A, UNC5A, RRAS, PDGFA, PIK3R1, GNA11, EFNA4, PGF, MYL9 (includes EG:10398), ROCK2, FZD8, IGF1, GLIS2, RHOD, NTRK3, WNT4, BMP7, EFNB3, RTN4R, FZD2, GLIS1
 Role of NANOG in mammalian embryonic stem cell pluripotency 1.62E00 .02399 0.09 FZD8, FZD10, JAK1, PIK3C2A, RRAS, PIK3R1, WNT4, BMP7, TCF7L1, FZD2
 Fructose and mannose metabolism 1.56E00 .02754 0.03 AKR7A2, GMDS, GALK1, FBP1, ALDOA
 Colorectal cancer metastasis signaling 1.55E00 .02818 0.06 FZD10, MMP7, JAK1, PIK3C2A, BAD, RRAS, PIK3R1, IFNGR1, BAX, PGF, FZD8, RHOD, WNT4, RHOF, FZD2, EGFR
 Interferon signaling 1.55E00 .02818 0.13 SOCS1, JAK1, IFITM1, IFNGR1
 Glucocorticoid receptor signaling 1.52E00 .03020 0.06 VCAM1, JAK1, PIK3C2A, RRAS, PIK3R1, CCL5, SLPI, HSPA8, HSP90AB1, DUSP1, GTF2H4, CDKN1C, FKBP5, POLR2I, UBE2I, ADRB2
 VDR/RXR activation 1.52E00 .03020 0.09 IGFBP6, FOXO1, PDGFA, IGFBP3, IGFBP5, HES1, CCL5
 ILK signaling 1.51E00 .03090 0.06 MYL9 (includes EG:10398), PARVB, FN1, PIK3C2A, RHOD, PIK3R1, CREB3L4, ITGB8, RHOF, PPP1R14B, ITGB5, PGF
 Basal cell carcinoma signaling 1.47E00 .03388 0.10 FZD8, FZD10, GLIS2, WNT4, BMP7, FZD2, GLIS1
 PI3K/AKT signaling 1.46E00 .03467 0.07 JAK1, BAD, FOXO1, HSP90AB1, RRAS, PIK3R1, SFN, EIF4EBP1, THEM4
 Human embryonic stem cell pluripotency 1.44E00 .03631 0.07 FZD8, FZD10, PIK3C2A, PDGFA, NTRK3, PIK3R1, SMAD6, WNT4, BMP7, FZD2
 Wnt/β-catenin signaling 1.44E00 .03631 0.07 SOX4, FZD8, SFRP4, FZD10, MMP7, FRZB, CDH3, WNT4, TCF7L1, PIN1, DKK1, FZD2
 Macropinocytosis signaling 1.42E00 .03802 0.08 PIK3C2A, RRAS, PDGFA, PIK3R1, ITGB8, ITGB5
 Non-small cell lung cancer signaling 1.39E00 .04074 0.08 BAD, TFDP1, PIK3C2A, RRAS, PIK3R1, EGFR
 Riboflavin metabolism 1.39E00 .04074 0.05 ACP5, ENPP3, ENPP1
 FLT3 signaling in hematopoietic progenitor cells 1.31E00 .04898 0.08 BAD, PIK3C2A, RRAS, PIK3R1, CREB3L4, EIF4EBP1
 Glutathione metabolism 1.29E00 .05129 0.05 GPX3, MGST1, GPX1, GSTT2, GSTO2
 Selenoamino acid metabolism 1.28E00 .05248 0.04 MGMT, PAPSS1 (includes EG:9061), MAT2A
 p53 signaling 1.27E00 .05370 0.08 SCO2 (includes EG:9997), CCND2, PIK3C2A, PIK3R1, RPRM, BAX, SFN
 IL-2 signaling 1.26E00 .05495 0.09 SOCS1, JAK1, PIK3C2A, RRAS, PIK3R1
 IL-3 signaling 1.26E00 .05495 0.08 JAK1, BAD, FOXO1, PIK3C2A, RRAS, PIK3R1
 Amyotrophic lateral sclerosis signaling 1.25E00 .05623 0.06 IGF1, PIK3C2A, PIK3R1, RAB5C, GPX1, BAX, PGF
 14-3-3-mediated signaling 1.24E00 .05754 0.07 BAD, FOXO1, PIK3C2A, RRAS, PIK3R1, BAX, SFN, PLCL1
 PDGF signaling 1.23E00 .05888 0.08 JAK1, PIK3C2A, RRAS, PDGFA, PIK3R1, CAV1
 Acute phase response signaling 1.22E00 .06026 0.06 HMOX1, SOCS1, SERPING1, FN1, RBP7, RRAS, C1S, PIK3R1, SERPINA3, SERPINA1, IRAK1
 Integrin signaling 1.21E00 .06166 0.06 ACTR2, PARVB, PIK3C2A, RHOD, RRAS, PIK3R1, CAV1, ITGB8, RHOF, TSPAN4, ITGB5, RAP2A
 Nitric oxide signaling in the cardiovascular system 1.21E00 .06166 0.07 PIK3C2A, HSP90AB1, PIK3R1, CAV1, SLC7A1, PGF
 Molecular mechanisms of cancer 1.21E00 .06166 0.05 FZD10, JAK1, PIK3C2A, BAD, TFDP1, RRAS, PIK3R1, GNA11, SMAD6, BAX, APH1A (includes EG:51107), FZD8, CCND2, FOXO1, RHOD, IHH, BMP7, RHOF, FZD2, RAP2A
 HMGB1 signaling 1.19E00 .06457 0.07 VCAM1, PIK3C2A, RHOD, RRAS, PIK3R1, IFNGR1, RHOF
 Nicotinate and nicotinamide metabolism 1.17E00 .06761 0.05 ENPP3, PRKX, ENPP1, QPRT, NAMPT, HIPK1, IRAK1
 Leukocyte extravasation signaling 1.14E00 .07244 0.06 ROCK2, CLDN10, MMP7, VCAM1, PIK3C2A, ICAM3, TIMP1, PIK3R1, RDX, MLLT4, CTTN
 Glioma signaling 1.11E00 .07762 0.06 IGF1, TFDP1, PIK3C2A, RRAS, PDGFA, PIK3R1, EGFR
 Methionine metabolism 1.1E00 .07943 0.04 DNMT3A, IL4I1, MAT2A
 mTOR signaling 1.1E00 .07943 0.06 HMOX1, NAPEPLD, PIK3C2A, RHOD, RRAS, PIK3R1, RHOF, PGF, EIF4EBP1
 Melanoma signaling 1.1E00 .07943 0.09 BAD, PIK3C2A, RRAS, PIK3R1
Pathways regulated in mid-secretory endometrium (MSE) from severe endometriosis vs mild MSE
 Neuregulin signaling 3.13E00 .00074 0.14 ITGB1, BAD, PIK3R1, DCN, PDPK1, PTEN, ERBB2IP (includes EG:55914), PRKCI, HSP90AB1, PTPN11, CDK5, HSP90AA1, PSEN1, EGFR
 Acute phase response signaling 2.63E00 .00234 0.11 IL6ST, SOCS1, MAP2K7, C1S, PIK3R1, PDPK1, CP, SERPINA3, MAP3K5 (includes EG:4217), IL1R1, TCF3, IRAK1, HMOX1, SOD2, RIPK1, PTPN11, C4BPA, MAP3K7, CRABP2, SERPINA1
 Docosahexaenoic acid (DHA) SIGNALING 2.37E00 .00427 0.16 BAD, FOXO1, PIK3C2A, PIK3R1, BIK, PDPK1, BAX
 Wnt/β-catenin signaling 2.34E00 .00457 0.12 SOX4, SOX7, FZD10, FRAT1, TCF7L1, TCF3, SOX17, CSNK1E, FZD8, TGFB1, MAP3K7, DKK3, CD44, PIN1, SOX18, SFRP1, DKK1, FZD2, FZD7
 Germ cell-sertoli cell junction signaling 2.14E00 .00724 0.11 EPN3, ITGB1, MAP2K7, PIK3C2A, CDC42, TJP1, PIK3R1, TUBG1, TUBB2A, PDPK1, MAP3K5 (includes EG:4217), IQGAP1, GSN, RHOQ, TGFB1, MAP3K7, PPAP2B, ACTN1
 Clathrin-mediated endocytosis signaling 2.11E00 .00776 0.10 ITGB1, ACTR2, PIK3C2A, RAB5A, CDC42, PDGFA, PIK3R1, CLTB, HSPA8, MET, ARRB1, FGF18, RAB5C, DAB2, TFRC, CTTN, ITGB5
 Prostate cancer signaling 2.09E00 .00813 0.12 BAD, TFDP1, FOXO1, PIK3C2A, HSP90AB1, SRD5A1, PIK3R1, HSP90AA1, PDPK1, CREB3L4, PTEN
 Mitochondrial dysfunction 1.94E00 .01148 0.09 NDUFS7, XDH, NDUFA13, APH1A (includes EG:51107), MAOB, NDUFB11, SOD2, NDUFS8, TXN2, NDUFB7, NDUFA3, CYC1, UQCRC1, PSEN1, MAOA
 Virus entry via endocytic pathways 1.89E00 .01288 0.12 ITGB1, PRKCI, CDC42, PIK3C2A, PIK3R1, CLTB, CD55, CAV1, TFRC, ITGB5, FOLR1
 Macropinocytosis signaling 1.86E00 .01380 0.13 ITGB1, MET, PRKCI, RAB5A, CDC42, PIK3C2A, PDGFA, PIK3R1, ITGB5
 Leukocyte extravasation signaling 1.83E00 .01479 0.09 ITGB1, PIK3C2A, CDC42, PIK3R1, RDX, THY1, ROCK2, GNAI2, CLDN23, PRKCI, PTPN11, ICAM3, EZR, CD44, MMP11, CTTN, ACTN1, TIMP2
 VDR/RXR activation 1.78E00 .01660 0.13 IGFBP6, SPP1, PRKCI, FOXO1, PDGFA, IGFBP5, NCOR2, HES1, CCL5, KLF4
 Notch signaling 1.77E00 .01698 0.16 RFNG, NOTCH2, NOTCH3, HEY2, HES1, APH1A (includes EG:51107), PSEN1
 NRF2-mediated oxidative stress response 1.5E00 .03162 0.09 AKR7A2, MAP2K7, PIK3C2A, PIK3R1, SLC35A2, DNAJC13, DNAJC3, MAP3K5 (includes EG:4217), DNAJA1, CLPP, MAFF, MAFG, HMOX1, PRKCI, SOD2, DNAJC4, MAP3K7
 Huntington disease signaling 1.43E00 .03715 0.08 MAP2K7, CAPN6, PIK3C2A, PIK3R1, GNA11, HSPA9, PDPK1, CREB3L4, BAX, GNG7, HDAC5, HSPA8, PRKCI, GNG11, CDK5, STX16, NCOR2, POLR2I, EGFR
 Hepatic fibrosis/hepatic stellate cell activation 1.42E00 .03802 0.10 PDGFA, FGFR1, FGFR2, IGFBP5, IL1R1, BAX, CCL5, MET, COL1A2, TGFB1, COL3A1, TIMP2, EGFR
 Insulin receptor signaling 1.42E00 .03802 0.09 JAK1, BAD, PIK3C2A, PIK3R1, PDPK1, VAMP2, PTEN, EIF4EBP1, PRKCI, RHOQ, FOXO1, PTPN11, PPP1R12A
 IGF-1 signaling 1.42E00 .03802 0.10 IGFBP6, PRKCI, BAD, FOXO1, PTPN11, PIK3C2A, PIK3R1, YWHAZ, PDPK1, IGFBP5
 Neurotrophin/TRK signaling 1.39E00 .04074 0.10 MAP2K7, CDC42, PTPN11, PIK3C2A, PIK3R1, PDPK1, CREB3L4, MAP3K5 (includes EG:4217)
 G beta gamma signaling 1.39E00 .04074 0.09 GNAI2, GNAS, GNG11, PRKCI, CDC42, GNA11, CAV1, PDPK1, GNG7, EGFR
 PI3K/AKT signaling 1.38E00 .04169 0.09 ITGB1, JAK1, BAD, FOXO1, HSP90AB1, PIK3R1, YWHAZ, HSP90AA1, PDPK1, MAP3K5 (includes EG:4217), PTEN, EIF4EBP1
 Semaphorin signaling in neurons 1.38E00 .04169 0.13 ROCK2, ITGB1, MET, RHOQ, CDK5, DPYSL4, NRP1
 Mitotic roles of polo-like kinase 1.38E00 .04169 0.11 ANAPC4, HSP90AB1, TGFB1, CDC7, HSP90AA1, CDC16, STAG2
 Histidine metabolism 1.37E00 .04266 0.05 PRPS2, ALDH3B2 (includes EG:222), MAOB, MGMT, ABP1, MAOA
 SAPK/JNK signaling 1.36E00 .04365 0.10 MAP2K7, GNG11, RIPK1, TRD@, CDC42, PIK3C2A, MAP3K7, PIK3R1, MAP3K5 (includes EG:4217), GNG7
 Type I diabetes mellitus signaling 1.34E00 .04571 0.10 SOCS1, HLA-DMA, MAP2K7, JAK1, RIPK1, TRD@, MAP3K7, IL1R1, MAP3K5 (includes EG:4217), HSPD1, IRAK1
 FGF signaling 1.3E00 .05012 0.10 MET, PTPN11, PIK3C2A, FGF18, PIK3R1, FGFR1, FGFR2, CREB3L4, MAP3K5 (includes EG:4217)
 Chronic myeloid leukemia signaling 1.25E00 .05623 0.10 CTBP1, RBL2, BAD, TFDP1, PTPN11, PIK3C2A, TGFB1, PIK3R1, CBLC, HDAC5
 RAR activation 1.25E00 .05623 0.08 CYP26A1, PIK3R1, NR2F2, PDPK1, MAP3K5 (includes EG:4217), PTEN, PRKCI, DUSP1, GTF2H4, TGFB1, CRABP2, RDH5, NCOR2, CARM1, SCAND1
 Phenylalanine metabolism 1.25E00 .05623 0.05 ALDH3B2 (includes EG:222), MAOB, ABP1, MAOA, PRDX2
 14-3-3-mediated signaling 1.24E00 .05754 0.10 PRKCI, BAD, FOXO1, PIK3C2A, PIK3R1, TUBB2A, TUBG1, YAP1, YWHAZ, BAX, MAP3K5 (includes EG:4217)
 Caveolar-mediated endocytosis signaling 1.23E00 .05888 0.10 ITGB1, RAB5A, CD55, RAB5C, CAV1, COPE, ITGB5, EGFR
 Ubiquinone biosynthesis 1.17E00 .06761 0.06 NDUFB11, NDUFS8, NDUFS7, MGMT, NDUFB7, NDUFA3, NDUFA13
 RAN signaling 1.17E00 .06761 0.13 KPNB1, RANBP2, RAN
 ILK signaling 1.11E00 .07762 0.08 MUC1, ITGB1, PIK3C2A, CDC42, PIK3R1, FERMT2, PDPK1, CREB3L4, PTEN, PARVB, RHOQ, PPAP2B, CHD1 (includes EG:1105), ACTN1, ITGB5
 Human embryonic stem cell pluripotency 1.07E00 .08511 0.08 FZD8, GNAS, FZD10, PIK3C2A, PDGFA, TGFB1, PIK3R1, FGFR1, FGFR2, PDPK1, FZD2, FZD7
 B Cell receptor signaling 1.06E00 .08710 0.08 MAP2K7, BAD, CDC42, PIK3C2A, PIK3R1, CREB3L4, MAP3K5 (includes EG:4217), PTEN, PTPRC, PTPN11, CARD10, MAP3K7, PAG1
 Ephrin receptor signaling 1.04E00 .09120 0.08 ITGB1, ACTR2, CDC42, PDGFA, GNA11, CREB3L4, GNG7, EFNA4, ROCK2, GNAI2, EPHB6, GNAS, GNG11, PTPN11, EFNB3
 Pentose phosphate pathway 9.86E-01 .10328 0.04 PRPS2, PGLS, FBP1, ALDOA
 Melanoma signaling 9.75E-01 .10593 0.11 BAD, PIK3C2A, PIK3R1, CHD1 (includes EG:1105), PTEN
 CCR5 signaling in macrophages 9.7E-01 .10715 0.08 GNAI2, GNAS, GNG11, PRKCI, TRD@, CCL5, GNG7
 FLT3 signaling in hematopoietic progenitor cells 9.45E-01 .11350 0.10 BAD, PTPN11, PIK3C2A, PIK3R1, PDPK1, CREB3L4, EIF4EBP1
 Oxidative phosphorylation 9.28E-01 .11803 0.08 ATP6V0E2, ATP6V0B, ATP5D, NDUFS7, TCIRG1, ATP6V1A, NDUFA13, NDUFB11, NDUFS8, NDUFB7, NDUFA3, CYC1, UQCRC1
 IL-8 signaling 9.27E-01 .11830 0.07 PIK3C2A, PIK3R1, BAX, GNG7, EIF4EBP1, IRAK1, ROCK2, GNAI2, HMOX1, GNAS, GNG11, PRKCI, RHOQ, EGFR
 Fructose and mannose metabolism 9.1E-01 .12303 0.04 AKR7A2, TSTA3, GMPPA, FBP1, ALDOA, FUK
 Cdc42 signaling 9E-01 .12589 0.08 ITGB1, ANAPC4, ACTR2, PRKCI, TRD@, CDC42, CDC42EP5, PPP1R12A, CDC16, IQGAP1
 Arginine and proline metabolism 8.96E-01 .12706 0.04 CKB, MAOB, VNN1, GAMT, LOXL1, ABP1, MAOA
 HGF signaling 8.69E-01 .13521 0.09 MET, MAP2K7, PRKCI, CDC42, PTPN11, PIK3C2A, MAP3K7, PIK3R1, MAP3K5 (includes EG:4217)
 EGF signaling 8.5E-01 .14125 0.10 MAP2K7, JAK1, PIK3C2A, PIK3R1, EGFR
 Nitric oxide signaling in the cardiovascular system 8.49E-01 .14158 0.08 PIK3C2A, HSP90AB1, PIK3R1, CAV1, HSP90AA1, SLC7A1, CACNA1A