Table 3.
Number of surrogates by r2 > 0.8 in three data sets
Re-sequence | 1000 Genomea | Hapmapb | Total | |
---|---|---|---|---|
rs10896449 | 25 | 29 | 17 | 31 |
rs10896438 | 21 | 16 | 9 | 24 |
rs12793759 | 6 | 8 | 0 | 8 |
52 | 53 | 26 | 63 |
Tag analyses were performed separately in the re-sequence data (447 variants, 63 samples), 1000 Genome data (Nov 2010 release, 430 variants, 60 samples) and HapMap CEU (release 28, 114 variants, 60 samples) in the re-sequenced region 11:68,642,75568,765,690 (UCSC genome build hg18) and number of surrogates for rs10896449, rs10896438 and rs12793759 by r2 > 0.8 was counted.
a1000 Genome CEU (Nov 2010 release, low-coverage data).
bHapMap III (release 2) CEU 60 founders.