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. Author manuscript; available in PMC: 2012 Apr 1.
Published in final edited form as: J Mol Graph Model. 2011 Jan 19;29(6):809–817. doi: 10.1016/j.jmgm.2011.01.005

Table 1.

The RMSD induced by the ligands on all the residues treated as flexible in the Induced Fit docking procedure was subjected to a forward stepwise variable selection to identify the models endowed with the highest discriminatory power. The top three resulting LDA models are based on the RMSD of the backbone of Ser2075.46, Val2065.45 and Phe2085.47.

Model 1 (RMSD_ Ser2075.46)
% CCa CCb MCc
Agonist 82.35 28 6
Blockers 93.75 30 2
Total 87.88 58 8
U = 0.499 F (1,64) = 64.28809 p < 0.000
Model 2 (RMSD_ Val2065.45)
% CC CC MC
Agonist 82.35 28 6
Blockers 81.25 26 6
Total 81.82 54 12
U = 0.543 F (1,64) = 53.848 p < 0.000
Model 3 (RMSD_ Phe2085.47)
% CC CC MC
Agonist 79.41 27 7
Blockers 87.50 28 4
Total 83.33 55 11
U = 0.595 F (1,64) = 43.627 p < 0.000
a

% CC is the percentage of correctly classified compounds.

b

CC is the number of correctly classified compounds.

c

MC is the number of misclassified compounds. To test the quality of the derived discriminant function, we used Wilks’ statistic (U), Fisher ratio (F) and the significance level (p).