Table 3.

Representative proteins with changes from top-ranked gene ontology categories^a

Accession	Protein name	Protein symbol	Unique peptides	Adjusted ratio mean (undel:del)	Adjusted ratio (SD)
IPI00455383	Clathrin heavy chain 1, splice isoform 2	CLTC	19	0.6	0.09
IPI00022463	Serotransferrin precursor	TF	18	2.56	0.88
IPI00022977	Creatine kinase, B chain	CKB	8	0.62	0.17
IPI00456623	Brevican core protein precursor, splice isoform 1 (brain-enriched hyaluronan-binding protein)	BCAN	7	2.81	0.84
IPI00383573	Septin 5	SEPT5	5	0.47	0.06
IPI00472718	Peptidylprolyl isomerase A isoform 2	PPIA	4	2.2	3.51
IPI00031522	Trifunctional enzyme alpha subunit, mitochondrial precursor	HADHA	4	0.61	0.22
IPI00220663	Hexokinase type I, splice isoform 2	HK1	4	0.57	0.14
IPI00163187	FSCN1 protein	FSCN1	4	2.41	0.89
IPI00472102	60 kDa heat shock protein, mitochondrial precursor	HSPD1	3	0.6	0.44
IPI00024993	Enoyl-CoA hydratase, mitochondrial precursor	ECHS1	3	0.41	0.26
IPI00027770	Synaptophysin	SYP	3	0.33	0.15
IPI00021854	Apolipoprotein A-II precursor	APOA2	2	3.13	1.06
IPI00032406	DnaJ homologue subfamily A member 2	DNAJA2	2	0.5	0.22
IPI00019912	Peroxisomal multifunctional enzyme type 2	HSD17B4	2	0.28	0.44
IPI00219018	Glyceraldehyde-3-phosphate dehydrogenase	GAPDH	2	1.84	0.62
IPI00377087	Gelsolin isoform b	GSN	2	1.55	0.27
IPI00018146	14-3-3 protein tau	YWHAQ	2	0.42	0.6
IPI00015029	Telomerase-binding protein p23	PTGES3	2	0.59	0.07
IPI00027434	Rho-related GTP-binding protein RhoC	RHOC	2	0.59	0.34
IPI00186299	Synapsin-2, splice isoform 2	SYN2	2	0.62	0.06
IPI00025311	Breast carcinoma amplified sequence 1 (novel amplified in breast cancer 1)	BCAS1	2	1.68	0.35

^aUndel:del: ratio of undeleted to deleted, SD: standard deviation.