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. 2011 Apr 20;153(1-2):62–75. doi: 10.1016/j.jbiotec.2011.02.011

Table 5.

miR-17-92 target regions are commonly conserved in Chinese hamster ovary cells.

No. Gene symbol RefSeq accession miR-17-92 seed family Seed pos. in mouse 3’ UTR Seed pairing Type pCT score Alignment Percentage identity
1 APP NM_007471.2 miR-17 family 726–732 7mer-m8 0.60 graphic file with name fx1.gif 91.0



2 BCL2L11 (Bim) NM_207680.2 miR-17 family 2107–2113 8mer 0.93 graphic file with name fx2.gif n/a



3 CCND1 NM_007631.2 miR-17 family 925–931 7mer-m8 0.87 graphic file with name fx3.gif 100.0



4 CDKN1A (p21) NM_007669.3 miR-17 family 436–442 7mer-m8 0.85 graphic file with name fx4.gif n/a



5 CTGF NM_010217.1 miR-18 family 1023–1029 7mer-m8 0.39 graphic file with name fx5.gif 100.0



6 E2F1 NM_007891.2 miR-17 family 469–475 7mer-m8 0.59 graphic file with name fx6.gif 91.7
E2F1 NM_007891.2 miR-17 family 984–990 7mer-m8 0.77 n/a



7 GAB1 NM_021356.2 miR-17 family 263–269 7mer-m8 0.68 graphic file with name fx7.gif n/a



8 HIF-1α NM_010431.1 miR-17 family 975–981 7mer-m8 0.36 graphic file with name fx8.gif 95.0
HIF-1α NM_010431.1 miR-18 family 304–310 7mer-m8 0.51 100.0



9 HIPK3 NM_005734.3 miR-25 family 118–124 7mer-m8 0.73 graphic file with name fx9.gif 100.0
HIPK3 NM_005734.3 miR-19 family 165–171 8mer 0.79 graphic file with name fx10.gif n/a



10 IRF1 NM_008390.1 miR-17 family 584–590 7mer-m8 0.44 graphic file with name fx11.gif 100.0



11 ITCH NM_008395.2 miR-17 family 1102–1108 7mer-m8 0.74 graphic file with name fx12.gif n/a



12 MAPK9 NM_016961.2 miR-17 family 361–367 7mer-m8 < 0.1 graphic file with name fx13.gif 95.0



13 MAPK14 NM_011951.2 miR-19 family 1819–1825 8mer 0.39 graphic file with name fx14.gif n/a



14 MYLIP NM_153789.3 miR-25 family 1200–1206 8mer 0.96 graphic file with name fx15.gif 95.0
MYLIP NM_153789.3 miR-19 family 1314–1320 8mer 0.90 100.0



15 NCOA3 NM_008679.2 miR-17 family 588–594 8mer 0.95 graphic file with name fx16.gif 95.0



16 PKD1. PKD2 NM_013630.2 miR-17 family 192–198 8mer 0.90 graphic file with name fx17.gif 82.6



17 PTEN NM_008960.2 miR-19 family 1236–1242 8mer 0.58 graphic file with name fx18.gif 100.0



18 RB1 NM_009029.1 miR-17 family 844–850 7mer-m8 0.31 graphic file with name fx19.gif 95.0



19 RB2/p130 NM_011250.2 miR-17 family 598–604 8mer 0.83 graphic file with name fx20.gif 100.0



20 RUNX1 NM_009821.1 miR-17 family 1748–1756 7mer-m8 0.88 graphic file with name fx21.gif n/a



21 SOCS-1 NM_009896.2 miR-19 family 293–299 8mer 0.9 graphic file with name fx22.gif 100.0



22 STAT3 NM_213659.2 miR-17 family 156–162 7mer-m8 0.56 graphic file with name fx23.gif 96.0



23 TGFBR2 NM_009371.2 miR-17 family 298–304 8mer 0.96 graphic file with name fx24.gif 95.0



24 THBS1 NM_011580.3 miR-19 family 1840–1846 7mer-1A 0.36 graphic file with name fx25.gif n/a



25 TSG101 NM_021884.3 miR-17 family 170–176 7mer-m8 < 0.1 graphic file with name fx26.gif 100.0



26 VEGFA NM_001025250.2 miR-17 family 109–115 7mer-m8 0.87 graphic file with name fx27.gif 100.0