Table 1. Assembly statistics for UMD2 and UMD3.
Measure | UMD2 | UMD3 |
Total sequence | 2.850 Gbp | 2.649 Gbp |
In chromosomes (placed) | 2.610 Gbp (91%) | 2.640 Gbp (99%) |
Unplaced | 240 Mbp | 9 Mbp |
Number of contigs | 75,775 | 70,770 |
Contig N50 | 88,288 bp | 103,785 bp |
Number of scaffolds | 134,667 | 39,978 |
Scaffold N50 | 7.9 Mp | 8.2 Mbp |
Number of gaps | 59,983 | 50,156 |
Gap N50 | 60,968 bp | 34,758 bp |
The N50 statistic is the minimum length of a feature (contig, scaffold, gap) such that using equal or longer features produces half of the bases of the genome-wide total.