Table 2.
Novel SNPs discovered via direct sequencing
| Novel SNPs | Region | Chr. Position | SNP | 5' Flanking Sequence | 3' Flanking Sequence | MAF in EA | MAF in AA | ss# (dbSNP) |
|---|---|---|---|---|---|---|---|---|
| PRDX6_171709541 | 5' UTR | 171709541 | G/C | CTTCAAGGTTC | ACCCTTATAGC | 0.04 | 0.02 | ss217326279 |
| PRDX6_171709910 | 5' UTR | 171709910 | G/T | ATGATCATTTTT | GAAATATACAG | 0.00 | 0.10 | ss217326288 |
| PRDX6_171710327 | 5' UTR | 171710327 | C/T | ACCCTAGCCCC | TGTGCTGGCA | 0.04 | 0.00 | ss217326273 |
| PRDX6_171710490 | 5' UTR | 171710490 | C/T | TGCACTGCGGA | GCAGGGACCT | 0.00 | 0.06 | ss217326283 |
| PRDX6_171710775 | 5' UTR | 171710775 | G/C | CTTATGGCTGG | GTGAGACATG | 0.00 | 0.02 | |
| PRDX6_171710821 | 5' UTR | 171710821 | C/T | ACTGCACTGAG | TTGTGTAAAGT | 0.00 | 0.10 | ss217326292 |
| PRDX6_171711029 | 5' UTR | 171711029 | C/T | ACTCAGAGACC | GGGTCCTCCG | 0.00 | 0.02 | |
| PRDX6_171712345 | 5' UTR | 171712345 | A/T | ATGGTTCATAA | AGAAAGGGGA | 0.87 | 0.64 | ss217326296 |
| PRDX6_171713694 | intron | 171713694 | G/T | TCACTTCCCCG | AGTGCCCAGG | 0.00 | 0.04 | ss217326300 |
| PRDX6_171713738 | intron | 171713738 | G/T | CCTCCGTTCTG | TGCTCCCTGG | 0.00 | 0.02 | |
| PRDX6_171713872 | intron | 171713872 | C/T | GCACAAAATGT | TAAAACCACTA | 0.00 | 0.12 | ss217326323 |
| PRDX6_171713919 | intron | 171713919 | G/C | AAAGACTTTTTG | AGCCGCCTCC | 0.02 | 0.00 | |
| PRDX6_171714107 | intron | 171714107 | C/T | CCAGGACACGT | TCCCCAACTTT | 0.00 | 0.04 | ss217326304 |
| PRDX6_171714984 | intron | 171714984 | C/T | GATCAAAAGTG | TTATCAGGGAG | 0.04 | 0.04 | ss217326307 |
| PRDX6_171715019 | intron | 171715019 | A/G | AGGAACACGGT | TATCTGCATTT | 0.00 | 0.10 | ss217326318 |
| PRDX6_171715596 | intron | 171715596 | A/G | GGGAGGGAAG | TGAACTGGCTT | 0.00 | 0.02 | |
| PRDX6_171716007 | intron | 171716007 | A/G | AAACCTTGGGA | GTGGCAGCCG | 0.00 | 0.04 | ss217326311 |
| PRDX6_171716032 | intron | 171716032 | G/C | TAAGTAGGAAG | TGCCCTTGTCT | 0.00 | 0.02 | |
| PRDX6_171716554 | intron | 171716554 | A/C | AGAAGCCAAGT | AACTTTAATTTT | 0.00 | 0.02 | |
| PRDX6_171716572 | intron | 171716572 | A/T | TCAACTTTAATT | TAAATAGAAGA | 0.00 | 0.02 | |
| PRDX6_171716582 | intron | 171716582 | A/G | TTACATATAAAT | ATAGAAACCTA | 0.00 | 0.04 | ss217326315 |
| PRDX6_171716584 | intron | 171716584 | A/T | ACATATAAATAG | AGAAACCTATT | 0.00 | 0.02 | |
| PRDX6_171716603 | intron | 171716603 | A/G | AACCTATTTATT | ATTACATAATTT | 0.00 | 0.02 | |
| PRDX6_171723151 | Intron | 171723151 | C/T | AAAGCTAGCAT | TGGAGAAGAA | 0.00 | 0.02 | |
| PRDX6_171723403 | Intron | 171723403 | C/T | CTTGATTAGTCT | AGCACCTGTAG | 0.00 | 0.02 | |
| PRDX6_171723889 | 3'UTR | 171723889 | G/T | AAAACTCAAAT | GGATCTCTGCA | 0.00 | 0.04 | |
| PRDX6_171723918 | 3'UTR | 171723918 | A/G | GCTTGTGACCA | GTCATATTTGT | 0.00 | 0.02 | |
| PRDX6_171724000 | 3'UTR | 171724000 | G/C | TAACTGTCCTAT | TCCTCTCCTGT | 0.00 | 0.04 | ss217326227 |
| PRDX6_171724128 | 3'UTR | 171724128 | G/T | TTTTTTTAATAT | TGATCACAGAA | 0.00 | 0.04 | ss217326232 |
| PRDX6_171724182 | 3'UTR | 171724182 | A/G | CATATTCTTTTA | TCTTGATCACA | 0.00 | 0.04 | ss217326236 |
| PRDX6_171724286 | 3'UTR | 171724286 | A/T | TTGCTATAAAAA | TTTGTGATAAG | 0.00 | 0.02 | |
| PRDX6_171724949 | 3'UTR | 171724949 | C/T | ACTCTACTAATA | CAGGTTTAGAA | 0.26 | 0.00 | ss217326270 |
| PRDX6_171725122 | 3'UTR | 171725122 | G/T | GGACCTGCTTC | TTGTAGTTTGC | 0.00 | 0.04 | ss217326239 |
| PRDX6_171725183 | 3'UTR | 171725183 | C/T | GGGATCATCGC | GTCTCATAAGG | 0.00 | 0.04 | ss217326242 |
| PRDX6_171725257 | 3'UTR | 171725257 | A/T | CCTCCCAAAGG | CATCCAAATAC | 0.00 | 0.04 | ss217326247 |
| PRDX6_171725485 | 3'UTR | 171725485 | C/T | CCTGCCTCAGC | GAGCAGCTGG | 0.00 | 0.06 | ss217326250 |
| PRDX6_171725681 | 3'UTR | 171725681 | G/T | ATATTTTTATTG | TAGAATAATGT | 0.00 | 0.02 | |
| PRDX6_171725826 | 3'UTR | 171725826 | A/G | TCTGGGGAATG | TTTGAAAGAGA | 0.04 | 0.00 | ss217326254 |
| PRDX6_171727146 | 3'UTR | 171727146 | G/C | CTGTGATTCCT | TTGTGGTCTTG | 0.02 | 0.00 | |
| PRDX6_171727831 | 3'UTR | 171727831 | C/T | ATGCATGGGAT | ATTATCCTCTA | 0.04 | 0.02 | ss217326261 |
| PRDX6_171728416 | 3'UTR | 171728416 | G/T | CCTCATTAGGG | CTCTTAGCCCT | 0.04 | 0.02 | ss217326266 |
| PRDX6_171728455 | 3'UTR | 171728455 | G/C | AATCGGGAGGC | TGTTAACAGGT | 0.00 | 0.04 | ss217326257 |
| PRDX6_171729049 | 3'UTR | 171729049 | C/T | GTTCTTAAACTA | AATAGCATGAG | 0.00 | 0.02 | |