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. 2011 Jun 23;6(6):e21360. doi: 10.1371/journal.pone.0021360

Table 4. Sets of primers for PCR and RT-PCR of target sequences.

Amplicon Forward Primer Reverse Primer AmpliconLength Access Number
PCR
NFM 5′- TCG-GCG-ATC-TCT-TCT-TTA-GCG- 3′ 5′- CGG-AGC-AA-TCA-CGA-AGA-GGA- 3′ 254 bp NM_017029
NFL 5′- TCC-CCC-TTG-AGT-CCT-CTT-GA- 3′ 5′- ACT-TGT-CCC-TTC-ACG-GGA-GA- 3′ 249 bp X53981
MBP 5′- CTT-CCG-AAG-GCC-TGA-TGT-GAT-3′ 5′- TAA-AGA-AGC-GCC-CGA-TGG-A-3′ 158 bp K00512
GFAP 5′- TCC-AGC-CCG-TCC-CTC-AAT-AA-3′ 5′- TCC-CGA-AGT-TCT-GCC-TGG-TAA-3′ 418 bp Z48978
MPZ5′ 5′- CTT-GCC-CCT-ACC-CCA-GCT-AT- 3′ 5′- TCT-CCT-TGG-CTG-GCT-CTC-AAT- 3′ 184 bp NM_017027
MPZ3′ 5′-CCC-TGG-CCA-TTG-TGG-TTT-ACA-3′ 5′-TGG-ATG-CGC-TCC-TTG-AAG-GT-3′ 291 bp NM_017027
ACT 5′- AAC-ACC-CCA-GCC-ATG-TAC-G- 3′ 5′- ATG-TCA-CGC-ACG-ATT-TCC-C- 3′ 254 bp M10277
ALB 5′-GGG-ATT-TAG-TTA-AAC-AAC-TT.-3′ 5′- AAA-GGT-TAC-CCA-CTT-CAT-TG- 3′ 206 bp M16825
AFP 5′-ACC-CAT-GCA-TCT-GTG-ACA-TA- 3′ 5′-AGT-AAA-ATG-CAT-GTT-GCC-TG- 3′ 252 bp J02816
RT-PCR
NFM 5′- TCG-GCG-ATC-TCT-TCT-TTA-GCG- 3′ 5′- CGG-AGC-AA-TCA-CGA-AGA-GGA- 3′ 254 bp NM_017029
NFL 5′- GAA-GAG-TGG-TTC-AAG-AGC-CGC-3′ 5 - TCG-TGC-TTC-GCA-GCT-CAT-TC-3′ 256 bp NM_031783
ACT 5′- AAC-ACC-CCA-GCC-ATG-TAC-G - 3′ 5′- ATG-TCA-CGC-ACG-ATT-TCC-C - 3′ 254 bp M10277
AFP 5′-CAG-TGA-GGA-GAA-ACG-GTC-CG- 3′ 5′-ATG-GTC-TGT-AGG-GCT-CGG-CC- 3′ 252 bp NM_012493

Genomic DNA amplicons used for the positional mapping of target-gene sequences relative to the NM and amplicons for reverse transcriptase-PCR analysis of mRNA (RT-PCR) used for studying the expression of the corresponding genes. NFM: Neurofilament medium, chromosome location 15p12; NFL: Neurofilament light, chromosome 14; MBP: myelin basic protein, chromosome 18q11–q13; GFAP: Glial fibrillary acidic protein, chromosome 10q32.1; MPZ5′: Myelin protein zero region 5′, chromosome 13q24–q25; MPZ3′: Myelin protein zero region 3′, chromosome 13q24–q25; ACT: β-actin, chromosome 12q11; ALB: albumin, chromosome 14p22; AFP: α-fetoprotein, chromosome 14p21.