TABLE 1.

Library assembly statistics

	SNPs			Read depth
	Diploid		Haploid		Correlation
	+/−	+/+	−	Mean	σ/μ	3-HE	7-HE	8-HE
ycnbwsp_2	6.7 × 10−6	2.4 × 10−6	2.6 × 10−6	18.57	0.455	0.0656 (0.0598–0.0714)	0.2001 (0.1945–0.2057)	0.2620 (0.2565–0.2674)
ycnbwsp_3-HE	1.5 × 10−5	3.0 × 10−6	3.6 × 10−6	22.58	0.634	−	0.7472 (0.7446–0.7498)	0.6904 (0.6874–0.6935)
ycnbwsp_7-HE	1.7 × 10−5	2.9 × 106	3.3 × 10−6	21.04	0.426	−	−	0.7621 (0.7597–0.7646)
ycnbwsp_8-HE	1.9 × 10−5	2.8 × 10−6	3.1 × 10−6	17.45	0.637	−	−	−

The proportion of sites in the assemblies with read depth of ≥10 that were called as different from the reference sequence (SNPs), either as heterozygotes (+/−) or as homozygotes (−/−) in a MAQ diploid assembly or as a divergent allele (−), in a MAQ haploid assembly are shown. Three properties of the distributions of read depth are presented: the mean, the coefficient of variation, and the correlation between pairs of assemblies at sites spaced 1000 bp apart (see text). The approximate 5% and 95% confidence intervals are in parentheses.