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. 2011 May;49(5):1899–1906. doi: 10.1128/JCM.00235-10

Table 3.

Concordance of HPV detection with standard and modified Linear Array assays following DNA extraction with the Qiagen Spin blood kit

Assayb No. of specimens with standard Linear Array/modified Linear Array result of:
 Agreement rate Ppos Pneg P valuea
+/+ +/− −/+ −/−
HPV06 15 0 16 346 0.958 0.652 0.977 <0.001
HPV11 3 0 6 368 0.984 0.500 0.992 0.041
HPV16 31 0 28 318 0.926 0.689 0.958 <0.001
HPV18 9 0 15 353 0.960 0.545 0.979 <0.001
HPV26 1 0 1 375 0.997 0.667 0.999 1.000
HPV31 6 0 22 349 0.942 0.353 0.969 <0.001
HPV33 1 0 12 364 0.968 0.143 0.984 0.002
HPV35 7 0 16 354 0.958 0.467 0.978 <0.001
HPV39 10 0 36 331 0.905 0.357 0.948 <0.001
HPV40 0 0 10 367 0.973 0.000 0.987 0.004
HPV42 3 0 28 346 0.926 0.176 0.961 <0.001
HPV45 9 1 4 363 0.987 0.783 0.993 0.371
HPV51 25 0 25 327 0.934 0.667 0.963 <0.001
HPV52 34 0 39 304 0.897 0.636 0.940 <0.001
HPV53 9 0 14 354 0.963 0.563 0.981 <0.001
HPV54 6 0 2 369 0.995 0.857 0.997 0.476
HPV55 4 0 5 368 0.987 0.615 0.993 0.074
HPV56 4 0 24 349 0.936 0.250 0.967 <0.001
HPV58 13 0 14 350 0.963 0.650 0.980 <0.001
HPV59 18 0 10 349 0.973 0.783 0.986 0.004
HPV61 20 0 10 347 0.973 0.800 0.986 0.004
HPV62 25 0 8 344 0.979 0.862 0.989 0.013
HPV66 10 0 6 361 0.984 0.769 0.992 0.041
HPV67 1 0 10 366 0.973 0.167 0.987 0.004
HPV68 3 0 10 364 0.973 0.375 0.986 0.004
HPV69 2 0 1 374 0.997 0.800 0.999 1.000
HPV70 1 0 1 375 0.997 0.667 0.999 1.000
HPV71 3 0 3 371 0.992 0.667 0.996 0.248
HPV72 0 0 1 376 0.997 0.000 0.999 1.000
HPV73 4 0 11 362 0.971 0.421 0.985 0.003
HPV81 4 0 3 370 0.992 0.727 0.996 0.248
HPV82 1 0 4 372 0.989 0.333 0.995 0.134
HPV83 6 1 2 368 0.992 0.800 0.996 1.000
HPV84 12 0 17 348 0.955 0.585 0.976 <0.001
IS39 1 0 2 374 0.995 0.500 0.997 0.480
HPV CP6108 17 0 10 350 0.973 0.773 0.986 0.004
Any of the 37 HPVs 159 0 106 112 0.719 0.750 0.679 <0.001
β-globin 377 2 19 34 0.951 0.973 0.764 <0.001
a

P value as determined by McNemar's test. P values of <0.05 indicate significant differences (in boldface).

b

HPV64 was omitted, as there were no positive samples in either assay.