Table 2.

Drosophila Experiment: Isolated SNPs

Algorithm	TP	FP	Precision	Recall
ComB	21,882	26	0.999	0.976
MAQ-con.	21,308	186	0.991	0.950
soapSNP	21,309	194	0.991	0.950
Corona Lite	18,511	6,091	0.752	0.826

SNP Calling was performed for four different Simulated SNP distributions. In each distribution, 50-bp color reads were simulated uniformly with a 1% error rate. In the isolated test, 22,422 SNPs were uniformly selected on the 22.4 million–bp Drosophilia melanogaster X chromosome.