Official websites use .gov
A
.gov website belongs to an official
government organization in the United States.
Secure .gov websites use HTTPS
A lock (
) or https:// means you've safely
connected to the .gov website. Share sensitive
information only on official, secure websites.
Analysis of Discrepant Alleles
| Position | dbSNP entry | Scheme | Q-values | Allele quality | Decision | |||
|---|---|---|---|---|---|---|---|---|
| 43150343 | C/T | lossy-8 | 41G | 27G | 22G | 32G | 10.2 | G |
| lossless | 39G | 28G | 20G | 30G | 9.9 | — | ||
| 46014280 | A/G | lossy-8 | 27C | 37C | 37C | 10.1 | C | |
| lossless | 27C | 36C | 36C | 9.9 | — | |||
In both cases, the lossy quality values result in a score that marginally exceeds the threshold of 10 used to call the allele. Thus, CASAVA would make a SNP call only in the lossy scheme of both cases.
