Table 1.
RMSD between the PMFs calculated from the all-atom simulations and the implicit membrane simulations with various hydrophobic thickness (LH)
| ρ (°) \ LH(Å) | 18.5 | 19.0 | 19.5 | 20.0 | 20.5 | 21.0 |
|---|---|---|---|---|---|---|
| Free | 0.78 | 0.28 | 0.33 | 0.24 | 0.28 | 0.14 |
| 0 | 0.94 | 1.07 | 1.18 | 1.52 | 1.56 | 1.87 |
| 90 | 0.34 | 0.42 | 0.43 | 0.65 | 1.16 | 1.36 |
| 180 | 0.33 | 0.45 | 0.47 | 0.61 | 1.18 | 1.45 |
| 270 | 0.31 | 0.38 | 0.54 | 0.71 | 1.06 | 1.17 |
Note that the PMFs were calculated as a function of WALP23's tilt angle at four specific rotation angles (ρ) and the term “Free” represents no rotational restraint applied.