Skip to main content
. 2011 Jun 22;100(12):2922–2928. doi: 10.1016/j.bpj.2011.02.063

Table 1.

RMSD between the PMFs calculated from the all-atom simulations and the implicit membrane simulations with various hydrophobic thickness (LH)

ρ (°) \ LH(Å) 18.5 19.0 19.5 20.0 20.5 21.0
Free 0.78 0.28 0.33 0.24 0.28 0.14
0 0.94 1.07 1.18 1.52 1.56 1.87
90 0.34 0.42 0.43 0.65 1.16 1.36
180 0.33 0.45 0.47 0.61 1.18 1.45
270 0.31 0.38 0.54 0.71 1.06 1.17

Note that the PMFs were calculated as a function of WALP23's tilt angle at four specific rotation angles (ρ) and the term “Free” represents no rotational restraint applied.