Table 1.
Name | Structure | Type | Ensemble | Atoms | Size (Å3) | Time (ns) |
---|---|---|---|---|---|---|
PIC-eq | PT, IQ, CaM | EQ | NPT/NVT | 74,421 | 94 × 92 × 90 | 34 |
PIC-sr-1 | PT, IQ, CaM | SMD/RE | NV/NVT | 104,662 | 206 × 70 × 72 | 80 |
PIC-re-1∗ | PT, IQ, CaM | RE | NVT | 104,662 | 206 × 70 × 72 | 120 |
PIC-sr-2∗ | PT, IQ, CaM | SMD/RE | NV/NVT | 104,662 | 206 × 70 × 72 | 20 |
PIC-re-2† | PT, IQ, CaM | RE | NVT | 104,662 | 206 × 70 × 72 | 100 |
P-sr | PT | SMD/RE | NV/NVT | 83,840 | 180 × 70 × 70 | 100 |
P-re‡ | PT | RE | NVT | 83,840 | 180 × 70 × 70 | 100 |
Under the column “Type,” the term “EQ” denotes an equilibrium molecular dynamics simulation, “SMD” denotes constant velocity (2 Å/ns) steered molecular dynamics simulations, and “RE” denotes relaxation simulations. The “Ensemble” column lists the variables held constant during the simulations; “N”, “V”, “P”, and “T” correspond to number of atoms, volume, pressure, and temperature, respectively. Movie S1, Movie S2, and Movie S3 depicting the simulations are provided in the Supporting Material.
Started from the end of simulation PIC-sr-1.
Started from the end of simulation PIC-sr-2.
Started from the end of simulation P-sr.