Table 2. SNPs of C. sinensis identified using AutoSNP software.

No. of sequences in each contig	No. of contigs with SNPs	No. of total SNPs	Total consensus length (bp)	SNP frequency (per 100 bp)
2	950	2,398	689,883	0.35
3	760	2,396	604,004	0.40
4	520	2,267	451,608	0.50
5	128	305	112,313	0.27
6	123	300	117,116	0.26
7–10	108	212	96,884	0.22
11–20	108	279	108,014	0.26
21–30	59	171	78,977	0.22
31–50	64	226	104,073	0.22
>50	76	523	112,516	0.46
Total	2,896	9,077	2,475,388	0.37