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. 2011 Jun 28;6(6):e21014. doi: 10.1371/journal.pone.0021014

Table 1. Accuracy of multiple Inline graphic estimators under Models Split and Tree.

Model Split Tree
K 1 2 3 4 5 3 4 5
Inline graphic 0.495 0.502 0.493 0.492 0.486 0.507 0.501
DIC 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.98
STRUCTURE 0.90 1.00 1.00 0.86 0.80 0.98 0.94 0.72
STRUCTURE, F model 0.90 0.98 0.94 0.82 0.54 0.90 0.82 0.62
Inline graphic 1.00 0.94 0.70 0.64 0.80 0.86 0.64
Inline graphic, F model 1.00 0.90 0.78 0.50 0.84 0.92 0.54
Eigenanalysis, Inline graphic 0.97 0.89 0.86 0.86 0.96 0.96 0.92 0.90
Eigenanalysis, Inline graphic 1.00 0.96 0.91 0.93 0.99 0.98 0.94 0.92
Eigenanalysis, Inline graphic 1.00 1.00 0.96 0.96 1.00 1.00 0.96 0.96
Structurama, noninformative prior 1.00 1.00 0.82 0.18 0.02 0.88 0.22 0.00
Structurama, correct prior 1.00 1.00 0.82 0.18 0.02 0.82 0.22 0.00
BAPS 1.00 1.00 1.00 0.82 1.00 1.00 1.00 0.96

Performance assessment of methods including DIC, STRUCTURE, Inline graphic, Eigenanalysis, Structurama and BAPS. “Inline graphic” is the population differentiation statistic estimated by SmartPCA [11] averaged across 50 data sets. STRUCTURE's performance is evaluated based upon both the original model and the correlated alleles or “F” model. Similarly tested is the Inline graphic statistic that relies on STRUCTURE. Eigenanalysis is tested at three significance levels (Inline graphic). Structurama is assessed using both a noninformative prior on Inline graphic and the true Inline graphic value as the starting point. BAPS is evaluated using the individual clustering mode. Blank values in the table indicate that a program did not generate a result.