Table 2.
CDSs related to beta-lactam antibiotics in L. hongkongensis
| CDS | Gene | Product | Organism with the closest matching sequences | E-value | Identities | Remarksa |
|---|---|---|---|---|---|---|
| LHK_00876 | β-lactamase domain protein | Thauera sp. | 6e-77 | 135/204 (66%) | ||
| LHK_00878 | gloB | Hydroxyacylglutathione hydrolase | Rickettsiella grylli | 6e-64 | 126/259 (48%) | |
| LHK_00975 | dacC | D-alanyl-D-alanine-carboxypeptidase | C. violaceum | e-140 | 254/379 (67%) | PBP6a |
| LHK_02726 | pbpG | D-alanyl-D-alanine-endopeptidase | C. violaceum | 4e-94 | 183/288 (63%) | PBP7 |
| LHK_02764 | prc | Carboxy-terminal processing protease | C. violaceum | 1e-173 | 315/480 (65%) | PBP3 processing protease |
| LHK_02836 | dacB | Serine-type D-Ala-D-Ala carboxypeptidase | C. violaceum | 3e-81 | 207/427 (48%) | PBP4a |
| LHK_02959 | mrcA | Peptidoglycan glycosyltransferase | C. violaceum | 0 | 512/795 (64%) | PBP1a |
| LHK_03028 | ampC | β-lactamase | C. violaceum | 7e-91 | 189/381 (49%) | |
| LHK_03062 | ftsI | Penicillin-binding protein 3 precursor | C. violaceum | 0 | 349/586 (59%) | PBP3 |
| LHK_03073 | mrdA | Penicillin-binding protein 2 | C. violaceum | 0 | 404/583 (69%) | PBP2 |
aPBP, penicillin-binding protein