Table 3.
zebra finch database | |||
---|---|---|---|
whole genome | cDNA | protein | |
contigs | 93,221 (97%) | 33,574 (35%) | 29,830 (31%) |
mean% similarity | 90 | 95 | 90 |
mean coverage depth of contigs | 12 | 17 | 17 |
unique hits | 76,708 | 10,085 | 9,732 |
chicken database | |||
whole genome | cDNA | protein | |
contigs | 64,262 (67%) | 34,844 (36%) | 30,423 (32%) |
mean% similarity | 89 | 90 | 85 |
mean coverage depth of contigs | 14 | 17 | 17 |
unique hits | 51,161 | 10,943 | 10,480 |
The number of unique sequences in the zebra finch/chicken database (genome, cDNA or protein) that matched contigs ("unique hits") are also shown. Genomic DNA hits were not classified as unique if they were located less than 100 bases from any other hit