Skip to main content
. 2011 Jun 2;12:283. doi: 10.1186/1471-2164-12-283

Table 4.

Summary of the assignment of GO domains to contigs

tissue tissue specific contigs assigned with GO terms number of GO terms

number of contigs
(number with τ ≥ 0.8)
mean τ biological process molecular function cellular component total GO terms unique to that tissue
(number with τ ≥ 0.8)
brain 517 (32) 0.73 1,020 327 262 1,609 114 (7)
heart 141 (43) 0.78 295 101 59 455 32 (18)
kidney 337 (18) 0.72 451 139 119 709 58 (8)
liver 219 (22) 0.75 260 114 56 430 49 (1)
muscle 265 (36) 0.75 307 75 70 452 44 (5)
pancreas 223 (42) 0.75 313 104 48 465 46 (24)
skin 433 (125) 0.77 593 126 114 833 67 (11)
testes 647 (54) 0.73 677 131 133 941 117 (10)
sum 2,782 (372) 0.75 3,916 1,117 861 5,894 527 (84)
all tissues 5,906 0.29 4,550 1,189 1,049 6,788 1,654

Contigs were assigned into the three GO domains (biological process, molecular function and cellular component) through 'is_a' pedigree mapping. The number of unique GO terms is also reported for each tissue