Table 5.
a) classes A and B | total | distance to nearest gene (bp) | ||||
---|---|---|---|---|---|---|
< 2,500 | < 5,000 | < 7,500 | < 10,000 | |||
19,357 | 5,843 | 8,429 | 9,778 | 10,752 | ||
19,721 | 5,708 | 8,227 | 9,621 | 10,570 | ||
b) classes C1 and D2 | total | alignment position of contig | ||||
start position | ||||||
84 | penultimate intron | final intron | final exon | 3' UTR | ||
1 | 7 | 74 | 2 | |||
end position | ||||||
97 | first exon | first intron | ||||
86 | 11 | |||||
c) class E3 | total | gene length (bp) |
length of alignment with genome sequence (bp) |
|||
49 | 64-202 | 131-1,235 | ||||
d) class F4 | total | aligns to one gene feature5 |
aligns to more than one gene feature6 |
|||
20,387 | 260 | |||||
one gene feature5, contig aligns to | ||||||
5'UTR | 3'UTR | exons | introns | |||
20,647 | 4 | 89 | 4 | 20,290 | ||
more than one gene feature6, contig aligns to | ||||||
contig start | contig end | |||||
exons | introns | exons | introns | 3' UTR | ||
111 | 149 | 105 | 152 | 3 |
Contigs are shown in grey while genes are in black
1 class C contigs align to genes with a mean of 10.5 exons (range 1-35 exons), 18% of genes have only one exon
2 class D contigs align to genes with a mean of 8.4 exons (range 1-33 exons), 20% of genes have only one exon
3 48 contigs extend from 5' (upstream) to 3' (downstream) of the closest mapped gene and one contig extends from the start position (i.e., the start of the 5'UTR) of the closest gene to 3' of the gene. All genes have only one exon
4 class F contigs align to genes with a mean of 16.4 exons (range 1-149 exons), 87% of genes have more than five exons
5 for example, the start and end of the contig are both within the 5' UTR
6 for example, the start of the contig aligns within exon 1 and the end of the contig aligns within intron 1