Table 7.
Chlamydiaceae | Chlamydiaceae species identification | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
detection method [# positive vs. # tested sample] |
detection method [# positive vs. # tested sample] |
species detected$ | |||||||||
flock # |
23 S RT PCR§ |
nested PCR |
positive rectal swabs |
species-specific RT PCR |
sequencing CHOMP |
DNA microarray |
ps | pc | ab | m | |
13 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
19 | 1/11 | 0/11 | 1/11 | 1/11 | - | - | - | - | - | 1 | ab,pc |
28 | 3/11 | 1/11 | 4/11 | 4/11 | - | - | - | 1 | 3 | - | ab,pc |
30 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
31 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
36 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
38 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
§0 = ct > 38; ab: $C. abortus; ps: C. psittaci; pc: C. pecorum; m: mixed infection;
- : not determined; neg.: negative;