Table 8.
Compilation of the PCR, sequencing, and microarray results from the rectal swabs of the vaccinated flocks
| Chlamydiaceae | Chlamydiaceae species identification | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| detection method [# positive vs. # tested sample] |
detection method [# positive vs. # tested sample] |
species detected$ | |||||||||
| flock # |
23 S RT PCR§ |
nested PCR |
positive vaginal swabs |
species-specific RT PCR |
sequencing CHOMP |
DNA microarray |
ps | pc | ab | m | |
| 13 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
| 19 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
| 28 | 2/11 | 0/11 | 2/11 | 2/11 | - | - | - | - | 2 | - | ab |
| 30 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
| 31 | neg. | - | 0/11 | - | - | - | - | - | - | - | - |
| 36 | 1/11 | 0/11 | 1/11 | 1/11 | - | 1/11 | - | - | 1 | - | ab |
| 38 | 2/11 | - | 2/11 | 2/11 | - | - | - | - | 2 | - | ab |
§0 = ct > 38; ab: $C. abortus; ps: C. psittaci; pc: C. pecorum; m: mixed infection;
- : not determined; neg.: negative;