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. 2011 May 28;39(Web Server issue):W270–W277. doi: 10.1093/nar/gkr366

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 2. — This figure shows a typical output of SwissDock for the docking of the Guanine nucleotide-binding protein G(q) subunit alpha, a target involved in uveal melanoma (35). (A) Screenshot of the Jmol applet which renders predicted BMs within the web browser. (B) Visual investigation using the ViewDock plugin of UCSF Chimera. The predicted BM of the guanosine diphosphate (magenta sticks) is superimposed to the X-ray BM (ball and sticks). As it can be seen in the lower part of the figure, this particular predicted BM has the most favorable energy.