Table 2.

Overlapping sets of genes supporting RuleGO and GeneCodis rules, unique sets of genes in the RuleGO service

Filtration	Ranking method	Compound quality measure			Overlapping gene sets	Unique gene sets
		Yails	Length	Depth
NO	*	*	*	*	25	293
YES	P-value	*	*	*	9	37
	Q measure	YES	YES	YES	16	70
		YES	YES	NO	12	72
		YES	NO	YES	11	51
		YES	NO	NO	11	52
		NO	YES	YES	13	72
		NO	YES	NO	10	68
		NO	NO	YES	14	57