Table 2.
Primers used for real-time PCR in elemental mixturea
MAC strain 104 gene | M. tuberculosis H37Rv gene | Primer sequence | Reference |
---|---|---|---|
Mav1094 | Rv0981 | 5′CTGGAAATGCTGATCGCCAACC3′ | He et al. (18) |
5′TCACGGCGGCGTCTCCCGAAGCACGTA3′ | |||
Mav3301 | Rv1477 | 5′ATGAGACGCACACGCTGG3′ | Gao et al. (15a) |
5′CTTGTTGACGCTTTCCTG3′ | |||
Mav4487 | Rv1818c | 5′ATGTCGTTCGTTCAAGCGACTC3′ | Brennan et al. (8) |
5′GTTCATCAACTGCACGAACTGG3′ | |||
Mav1365 | Rv1221 | 5′GATCTCCTCATACGACAG3′ | Manganelli et al. (28) |
5′GACCTTCATCCGGGTGTTC3′ | |||
Mav5014 | Rv0170 | 5′CAGACTCAGCATCTTCTC3′ | Haile et al. (16a) |
5′GTCGACCAGCTGCACCGAAC3′ | |||
Mav3270 | Rv1592 | 5′ATGGCAACCGAACTCCGAAAG3′ | Danelishvili et al. (11) |
5′GAAAACGAAACGACGGGTCGT3′ | |||
Mav2420 | Rv3902 | 5′CACTTGGTGGAGGTGCACCCGACTC3′ | Danelishvili et al. (11) |
5′GGACGTGATGTTTCCGCTTATTC3′ | |||
Mav1600 | 5′ATGTCCGACACCACAACAG3′ | Plum et al. (32a) | |
5′CTTCGACGAATTCGTTCCC3′ | |||
Mav0996 | Rv0867 | 5′CACCACTTCCAGTGTCAG3′ | Hou et al. (19) |
5′GTGTTGATGCCCCAGTTG3′ | |||
Mav0660 | Rv3496 | 5′GACTGTTTGACCTCGTCCCAC3′ | Hou et al. (19) |
5′GTGTATGTGCTGACGTCGCAAG3′ | |||
Mav2409 | Rv2096c | 5′GTGGGCAGTCTTAGTCCGTG3′ | Hou et al. (19) |
5′CTTGAAGATCCGCATCGACTT3′ | |||
Mav1424 | Rv1275 | 5′CTGACGGGCTGTTCCCGCTCG3′ | Danelishvili et al. (10) |
5′CTAGGAATTGGTCGCCAGCGT3′ | |||
Mav0467 | Rv3663 | 5′ATGACCACCCCGCTGCTGTCG3′ | Danelishvili et al. (10) |
5′GCCACCTGGTCGACGAGGTCG3′ | |||
Mav3275 | Rv1497 | 5′GCTGGAGCTGGCCGA3′ | Danelishvili et al. (10) |
5′CGGCACGTACAGGTTTCGGTC3′ | |||
Mav2928 | Rv1787 | 5′ACGAATTCACGGTGTTTGACTTCGGAGCG3′ | Li et al. (26a) |
5′ACAAGCTTGTGGACTCTCGGTCGTGTTGAGG3′ | |||
Mav4781 | Rv0359 | 5′CGGCTGGCTGGTGTCGCTGTG3′ | Danelishvili et al. (10) |
5′ACGCCGGAGAAGTCGAAC3′ | |||
Mav2036 | Rv2359 | 5′CGACGGGGCAGGAGTCAG3′ | Milano et al. (30) |
5′ATGGTGTGGCTGACGTCGGAGAA3′ | |||
Mav4357 | Rv3412 | 5′GACCACCTCCCACCGGGTTT3′ | Danelishvili et al. (10) |
5′TTGAGTGAGGCGTCGGCGTAG3′ |
Primers used for real-time PCR in the 24-h elemental mixture, along with the nearest M. tuberculosis homolog and reference in which the genes have been proven to be upregulated when Mycobacterium avium complex (MAC) is inside cells.