Table 1.
Primers used for mutagenesis of human TRIM56
Mutation | Primer | Primer sequence |
---|---|---|
A (ΔRING) | del2-71F | 5′-CCTTCGCGGATCCATGTCCTTCAAGACCAACT-3′ |
del2-71R | 5′-AGTTGGTCTTGAAGGACATGGATCCGCGAAGG-3′ | |
B (ΔB box) | del161-205F | 5′-GTGGTATGATGAGGAGGCTGAAGCTGTGCGTG-3′ |
del161-205R | 5′-CACGCACAGCTTCAGCCTCCTCATCATACCAC-3′ | |
C (Δcoiled coil) | del211-363F | 5′-GCTGAAGCTGTGCGTCACCTTCTTCGGCTG-3′ |
del211-363R | 5′-CAGCCGAAGAAGGTGACGCACAGCTTCAGC-3′ | |
D (Δ369-742) | del369-742F | 5′-CACCTTCTTCGGCTGGGGACCATCCACATC-3′ |
del369-742R | 5′-GATGTGGATGGTCCCCAGCCGAAGAAGGTG-3′ | |
E (Δ77-742) | del77-742F | 5′-CTCCTTCAAGACCAACGGGACCATCCACATCT-3′ |
del77-742R | 5′-AGATGTGGATGGTCCCGTTGGTCTTGAAGGAG-3′ | |
F (ΔN363) | del2-363F | 5′-CTTCGCGGATCCATGCACCTTCTTCGGCTG-3′ |
del2-363R | 5′-CAGCCGAAGAAGGTGCATGGATCCGCGAAG-3′ | |
G (ΔRING + B box) | del2-205F | 5′-CTTCGCGGATCCATGGCTGAAGCTGTGCGT-3′ |
del2-205R | 5′-ACGCACAGCTTCAGCCATGGATCCGCGAAG-3′ | |
H (Δ211-284) | del211-284F | 5′-GCTGAAGCTGTGCGTGAAGAAGCTGCTCGG-3′ |
del211-284R | 5′-CCGAGCAGCTTCTTCACGCACAGCTTCAGC-3′ | |
I (Δ290-353) | del290-353F | 5′-GAAGAAGCTGCTCGGCTCCATCCTGGGCTC-3′ |
del290-353R | 5′-GAGCCCAGGATGGAGCCGAGCAGCTTCTTC-3′ | |
J (Δ355-433) | del355-433F | 5′-CCACAGCTGGAGCTCACCTTGGAGGAGGAC-3′ |
del355-433R | 5′-GTCCTCCTCCAAGGTGAGCTCCAGCTGTGG-3′ | |
K (Δ431-519) | del431-519F | 5′-ACAACCCGAGAAGAGGAGATCCTGGTGGCG-3′ |
del431-519R | 5′-CGCCACCAGGATCTCCTCTTCTCGGGTTGT-3′ | |
L (Δ515-610) | del515-610F | 5′-GATCACCGGGCTCTGTGTGGAGGTGTACAATA-3′ |
del515-610R | 5′-TATTGTACACCTCCACACAGAGCCCGGTGATC-3′ | |
M (Δ621-695) | del621-695F | 5′-AATATGGAAGGCAGCCTGCTTCGAGAAGTCAACAAG-3′ |
del621-695R | 5′-CTTGTTGACTTCTCGAAGCAGGCTGCCTTCCATATT-3′ | |
N (Δ693-750) | del693-750F | 5′-GATAAGAAGGGCTACATCCGTTCTCCGGACAGTATC-3′ |
del693-750R | 5′-GATACTGTCCGGAGAACGGATGTAGCCCTTCTTATC-3′ | |
C24A | TM56 C24A+ | 5′-ACTTCCTGGCCTGTAAAATCGCCCTGGAGCAGCTGCG-3′ |
TM56 C24A− | 5′-CGCAGCTGCTCCAGGGCGATTTTACAGGCCAGGAAGT-3′ | |
CC21/24AA | TM56 CC21/24AA+ | 5′-AGCGACTTCCTGGCCGCTAAAATCGCCCTGGAGCAGCTGCG-3′ |
TM56 CC21/24AA− | 5′-CGCAGCTGCTCCAGGGCGATTTTAGCGGCCAGGAAGTCGCT-3′ |