Table 2.

Putative breakpoints of intercompartment recombinants

Mosaic sequence	No. of breakpoints	Parental sequences	Regiona	No. of supporting sites	Breakpoint positiona	P
E21BrD46	1	E21BrD82	1–1956	22	2101	<0.0001
		E21LnD10	2161–2571	6
E21BrD92	1	E21BrD62	1–1650	22	1846	<0.0001
		E21LnD13	1931–2571	7
E21BrD100	1	E21BrD119	1–2127	26	2210	<0.0001
		E21LnD43	2217–2571	4
E21BrD107	3	E21BrD90	1–253	2	262	0.0442
		E21LnD56	364–687	8	775	<0.0001
		E21BrD90	829–1392	16	1515	0.0056
		E21LnD56	1650–2571	8
KM11BlR7	2	KM11BlR22	1–93	2	219	0.0365
		KM11SeR2	394–848	9	864	0.0004
		KM11BlR22	914–2571	23
KM34SeR3	2	KM34SeR21	1–837	17	911	0.0004
		KM34BlR71	1017–1080	4	1164	0.0569
		KM34SeR21	1227–2571	3
KM34SeR54	2	KM34SeR49	1–837	14	905	0.0007
		KM34BlR71	1017–1080	4	1173	0.0286
		KM34SeR49	1227–2571	4
KM34SeR63	2	KM34SeR26	1–238	3	319	0.0356
		KM34BlR11	363–450	5	551	0.0010
		KM34SeR26	557–2571	9

^aThe coordinates are given relative to the nucleotide position in the HXB2 reference strain env gene.