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. 2011 Jun;85(12):5745–5756. doi: 10.1128/JVI.02343-10

Table 1.

Oligonucleotides used for overlapping PCRs

Mutant Mutation(s)a Oligonucleotide
Orientationb Sequence
M1 R279 K282 For GGGAAAGCCATAGAAGCAATAAAGCAAGAGC
Rev GCTCTTGCTTTATTGCTTCTATTGCTTTCCCAATTATATC
M2 K300 For ACCAAGACCACCCATACGCCACGTGGGCATAC
Rev GTATGCCCACGTGGCGTATGGGTGGTCTTGGT
M3 K311 For ATGGTAGCTATGAAACAGCACAGACTGGATCAGCA
Rev TGCTGATCCAGTCTGTGCTGTTTCATAGCTACCAT
M4 R325 For CAACGGAGTGGTCGCGCTGCTGACAAAACCTTG
Rev CAAGGTTTTGTCAGCAGCGCGACCACTCCGTTG
M5 R361 K370 For AAAGTGGACACGGCAACCCAAGAACCGAAAGAAGGCACGGCCAAACTAATGAAAA
Rev TTTTCATTAGTTTGGCCGTGCCTTCTTTCGGTTCTTGGGTTGCCGTGTCCACTTT
M6 K386 K388 For AAAGAATTAGGGGCGAAAGCGACACCCAGGATGTGCACCAGAGAA
Rev TTCTCTGGTGCACATCCTGGGTGTCGCTTTCGCCCCTAATTCTTT
M7 R391 R395 For GAAGAAAAAGACACCCGCGATGTGCACCGCAGAAGAATTCACAAG
Rev CTTGTGAATTCTTCTGCGGTGCACATCGCGGGTGTCTTTTTCTTC
M8 R400 K401 For CCAGAGAAGAATTCACAGCAGCCGTGAGAAGCAATGC
Rev GCATTGCTTCTCACGGCTGCTGTGAATTCTTCTCTGG
M9 R438 For TGGTTGACAAGGAAGCGAATCTCCATCTTGAAGG
Rev CCTTCAAGATGGAGATTCGCTTCCTTGTCAACCA
M10 K456 R457 For ACATGATGGGAGCAGCTGAGAAGAAGCTAGGGGAATTCGGCAAGGC
Rev GCCTTGCCGAATTCCCCTAGCTTCTTCTCAGCTGCTCCCATCATGT
M10.1 K456 For ACATGATGGGAGCAAGAGAGAAGAAGCTAGGGGAATTCGGCAAGGC
Rev GCCTTGCCGAATTCCCCTAGCTTCTTCTCTCTTGCTCCCATCATGT
M10.2 R457 For ACATGATGGGAAAAGCTGAGAAGAAGCTAGGGGAATTCGGCAAGGC
Rev GCCTTGCCGAATTCCCCTAGCTTCTTCTCAGCTTTTCCCATCATGT
M11 K456 R457 K459 K460 For TACAACATGATGGGAGCAGCTGAGGCAGCACTAGGGGAATTCGGCA
Rev TGCCGAATTCCCCTAGTGCTGCCTCAGCTGCTCCCATCATGTTGTA
M12 R481 For TGTGGCTTGGAGCAGCCTTCTTAGAGTTTGAAGCCCTAGGAT
Rev ATCCTAGGGCTTCAAACTCTAAGAAGGCTGCTCCAAGCCACA
M13 R519 K523 For GTTACATTCTAGCAGACGTGAGCGCAAAAGAGGGAGGAGCA
Rev TGCTCCTCCCTCTTTTGCGCTCACGTCTGCTAGAATGTAAC
M14 R540 For CCGCAGGATGGGATACAGCAATCACACTAGAAGACCTAAAAAATG
Rev CATTTTTTAGGTCTTCTAGTGTGATTGCTGTATCCCATCCTG
M15 K561 K562 For ATGGAAGGAGAACACGCAGCGCTAGCCGAGGCCATTTTCAAACT
Rev AGTTTGAAAATGGCCTCGGCTAGCGCTGCGTGTTCTCCTTCCAT
M16 K575 R578 R581 For GTACCAAAACGCGGTGGTGGCTGTGCAAGCACCAACACCAAGA
Rev TCTTGGTGTTGGTGCTTGCACAGCCACCACCGCGTTTTGGTAC
M17 R648 R651 For GCAAAACTGGTTAGCAGCTGTGGGGGCCGAAAGGTTATC
Rev GATAACCTTTCGGCCCCCACAGCTGCTAACCAGTTTTGC
M18 R769 For ACTTCCACAGAGCCGACCTCAGGCTGGCGGCAAATGCTAT
Rev ATAGCATTTGCCGCCAGCCTGAGGTCGGCTCTGTGGAAGT
M19 K840 R841 For AGGAAATCCCATACTTGGGGGCAGCGGAAGACCAATGG
Rev CCATTGGTCTTCCGCTGCCCCCAAGTATGGGATTTCCT
a

All residues were mutated to alanines.

b

For, forward; Rev, reverse.