Table 1.
Oligonucleotides used for overlapping PCRs
| Mutant | Mutation(s)a | Oligonucleotide |
|
|---|---|---|---|
| Orientationb | Sequence | ||
| M1 | R279 K282 | For | GGGAAAGCCATAGAAGCAATAAAGCAAGAGC |
| Rev | GCTCTTGCTTTATTGCTTCTATTGCTTTCCCAATTATATC | ||
| M2 | K300 | For | ACCAAGACCACCCATACGCCACGTGGGCATAC |
| Rev | GTATGCCCACGTGGCGTATGGGTGGTCTTGGT | ||
| M3 | K311 | For | ATGGTAGCTATGAAACAGCACAGACTGGATCAGCA |
| Rev | TGCTGATCCAGTCTGTGCTGTTTCATAGCTACCAT | ||
| M4 | R325 | For | CAACGGAGTGGTCGCGCTGCTGACAAAACCTTG |
| Rev | CAAGGTTTTGTCAGCAGCGCGACCACTCCGTTG | ||
| M5 | R361 K370 | For | AAAGTGGACACGGCAACCCAAGAACCGAAAGAAGGCACGGCCAAACTAATGAAAA |
| Rev | TTTTCATTAGTTTGGCCGTGCCTTCTTTCGGTTCTTGGGTTGCCGTGTCCACTTT | ||
| M6 | K386 K388 | For | AAAGAATTAGGGGCGAAAGCGACACCCAGGATGTGCACCAGAGAA |
| Rev | TTCTCTGGTGCACATCCTGGGTGTCGCTTTCGCCCCTAATTCTTT | ||
| M7 | R391 R395 | For | GAAGAAAAAGACACCCGCGATGTGCACCGCAGAAGAATTCACAAG |
| Rev | CTTGTGAATTCTTCTGCGGTGCACATCGCGGGTGTCTTTTTCTTC | ||
| M8 | R400 K401 | For | CCAGAGAAGAATTCACAGCAGCCGTGAGAAGCAATGC |
| Rev | GCATTGCTTCTCACGGCTGCTGTGAATTCTTCTCTGG | ||
| M9 | R438 | For | TGGTTGACAAGGAAGCGAATCTCCATCTTGAAGG |
| Rev | CCTTCAAGATGGAGATTCGCTTCCTTGTCAACCA | ||
| M10 | K456 R457 | For | ACATGATGGGAGCAGCTGAGAAGAAGCTAGGGGAATTCGGCAAGGC |
| Rev | GCCTTGCCGAATTCCCCTAGCTTCTTCTCAGCTGCTCCCATCATGT | ||
| M10.1 | K456 | For | ACATGATGGGAGCAAGAGAGAAGAAGCTAGGGGAATTCGGCAAGGC |
| Rev | GCCTTGCCGAATTCCCCTAGCTTCTTCTCTCTTGCTCCCATCATGT | ||
| M10.2 | R457 | For | ACATGATGGGAAAAGCTGAGAAGAAGCTAGGGGAATTCGGCAAGGC |
| Rev | GCCTTGCCGAATTCCCCTAGCTTCTTCTCAGCTTTTCCCATCATGT | ||
| M11 | K456 R457 K459 K460 | For | TACAACATGATGGGAGCAGCTGAGGCAGCACTAGGGGAATTCGGCA |
| Rev | TGCCGAATTCCCCTAGTGCTGCCTCAGCTGCTCCCATCATGTTGTA | ||
| M12 | R481 | For | TGTGGCTTGGAGCAGCCTTCTTAGAGTTTGAAGCCCTAGGAT |
| Rev | ATCCTAGGGCTTCAAACTCTAAGAAGGCTGCTCCAAGCCACA | ||
| M13 | R519 K523 | For | GTTACATTCTAGCAGACGTGAGCGCAAAAGAGGGAGGAGCA |
| Rev | TGCTCCTCCCTCTTTTGCGCTCACGTCTGCTAGAATGTAAC | ||
| M14 | R540 | For | CCGCAGGATGGGATACAGCAATCACACTAGAAGACCTAAAAAATG |
| Rev | CATTTTTTAGGTCTTCTAGTGTGATTGCTGTATCCCATCCTG | ||
| M15 | K561 K562 | For | ATGGAAGGAGAACACGCAGCGCTAGCCGAGGCCATTTTCAAACT |
| Rev | AGTTTGAAAATGGCCTCGGCTAGCGCTGCGTGTTCTCCTTCCAT | ||
| M16 | K575 R578 R581 | For | GTACCAAAACGCGGTGGTGGCTGTGCAAGCACCAACACCAAGA |
| Rev | TCTTGGTGTTGGTGCTTGCACAGCCACCACCGCGTTTTGGTAC | ||
| M17 | R648 R651 | For | GCAAAACTGGTTAGCAGCTGTGGGGGCCGAAAGGTTATC |
| Rev | GATAACCTTTCGGCCCCCACAGCTGCTAACCAGTTTTGC | ||
| M18 | R769 | For | ACTTCCACAGAGCCGACCTCAGGCTGGCGGCAAATGCTAT |
| Rev | ATAGCATTTGCCGCCAGCCTGAGGTCGGCTCTGTGGAAGT | ||
| M19 | K840 R841 | For | AGGAAATCCCATACTTGGGGGCAGCGGAAGACCAATGG |
| Rev | CCATTGGTCTTCCGCTGCCCCCAAGTATGGGATTTCCT | ||
All residues were mutated to alanines.
For, forward; Rev, reverse.