Table 3.
Summary of transposed AtMul elements and insertion sites in ddm1 mutant plants.
|
ddm1-line
|
Ecotype
|
Generation
|
chr.
|
Gene nearest to insertion
|
Accession
|
Orientation of TIR–MULE
|
Comments
|
Target site duplication
|
|---|---|---|---|---|---|---|---|---|
| 4853/7 | Col-0 | F3 | 1 | F25P12.97 | AC009323.4 | 5′-3′ | hypothetical protein, 222bp upstream | ttaaatctt (9bp) |
| 4853/155 | Col-0 | F3 | 2 | T20F21.11 | AC006068.3 | 3′-5′ | AP2 domain transcription factor 317bp downstream | aagtttttc (9bp) |
| 4853/48 | Col-0 | F3 | 2 | F12K2.19 | AC006233.3 | 3′-5′ | unknown protein, 774bp upstream | ttatttaaa (9bp) |
| 4855/4 | Col-0 | F5 | 4 | T3H13.5 | AF128396.1 | 3′-5′ | retrotransposon 2524bp from HY4 | aatttatta (9bp) |
| 4853/6 | Col-0 | F3 | 5 | MBM17.4 | AB019227.1 | 3′-5′ | protein kinase, 414bp upstream | aagattctt (9bp) |
| 4853/154b | Col-0 | F3 | 5 | MRO11.11 | AB005244.2 | 3′-5′ | unknown protein 290bp upstream | aagtatcaa (9bp) |
| 4220/11b | Col-0 | F6 | 5 | MCA23.3 | AB016886.1 | N.D. | GTPase activating protein | N.D.a |
| 4574/21 | La-er | F3 | 1 | F8K4.9 | AC004392.1 | 5′-3′ | hypothetical protein 800bp upstream | agtattatt (9bp) |
| 4575/21 | La-er | F4 | 3 | MBK21.21 | AB024033.1 | 5′-3′ | putative auxin-regulated protein 1423bp upstream | ttttttttt (9bp) |
| 204/7b | La-er | F5 | 3 | MFE16.2 | AB028611.1 | N.D. | Unknown protein, downstream | N.D.a |
a
Exact insertion site and orientation of element could not be determined.
b
Line extinct.